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The map label for this gene is yngJ [H]

Identifier: 73537439

GI number: 73537439

Start: 164089

End: 165234

Strand: Reverse

Name: yngJ [H]

Synonym: Reut_B3604

Alternate gene names: 73537439

Gene position: 165234-164089 (Counterclockwise)

Preceding gene: 73537442

Following gene: 73537438

Centisome position: 6.06

GC content: 68.24

Gene sequence:

>1146_bases
GTGGATTTCCAGTTCAGCGAAGAACAATCGATGCTGCGCGACACGCTCGCGCGGTACCTGGCCGACCACTATGACTTTGA
AGCGCGCCGCGCCGCAGAGCGTTCCGAAGCAGGATGGCGTCCCGACTGCTGGCGCGCCTTTGCGCGCGAACTCGGCATCC
TTGGCGCGGGATTTCCGGAGGCGCTGGGCGGCCTTGGCGGCGGAGCGCCCGAACACATGATCGTAATGGAGCAGTTCGGC
CGCCATCTTGTGCTCGAACCGTACCTGTCGACCGTCGTACTAGGCGGCGGTGCGCTGGTGCACGGCAACAAGGTGCTGGC
GGAGCAATGGGTGCCCGCGATCATCGGCGGGGAAGCGACTTTCGGCTGGGCGCATGCCGAACCGGCCAGCCGCTATTGCC
GGCACGACGTGCAGTCCAGCGCCACGCATGACAGCCGCGGCTATGTCCTTAGCGGCCACAAATCCGTGGTTGCGGGCGCG
CCCTTCGCCACGCATTTCGTCGTCAGTGCCCGCACCAGCGGCAAGCGGCGCGACACCGACGGCATCACGCTGTTCTGGGT
GCCGCGCGACACGCCGGGCGTGACCCTGCGCGAGTACCCGACCATCGACGGCAACCGCGCCGCCGAAGTGCTGTTCGACC
AGGCCAGGGTCCCGGCCAGCCATGTGATCGGCACCGAAGGACAAGCACTGCCGCTGATCGAGCAGCTCAGCGATGCCGCG
CTCGTGGCCCTGAGCGCGGAAGCCAACGGTACGATGGCGCGCATGCTTGCGGACACGATCGACTATGCGCGCCAGCGCAA
GCAGTTCGGCGTGGCCATTGGCAGCTTCCAGGTGCTGCAGCACCGCATGGCGGATATGGCGATGCAGCTCGAGCAGTCCC
TGGCGCTGACGCAGGTCGCTGCGATGCAGGCCCCGGCGCCAGAGCGCGAGCGAGCCCTGGCTGCATGCGCGGCCAAGGCG
CAGGCCGGGCAGGCTGGCCGCTTCATCGGCCAGGCCGCGGTGCAGATCCACGGCGGCATGGGCGTGACCGATGAACTCGC
CGTGGGGCACTACTTCAAGCGCGTCACGGCCATCGACCTGCAGTTCGGCTCGGCCGAACACCACCTGGGCCGCTACGCCG
ACCTGCTCTACCCGGCCGCAGCCTGA

Upstream 100 bases:

>100_bases
TGCGCCGGCGTCAGGCTTGCCCCGAAGATGGCCGGCGCAGCACGTCTCGGGCCAACGCGCCCTTCCCATTCCGTGCATTC
CCGTGCAGAAAGGAGCCGAG

Downstream 100 bases:

>100_bases
CGCTGCACCGCACGACACCCCGCACCCTTCAGAGAGGCCCGCGATGCATCTCGAATTCTCCGAGCAAGACCTGCAGTTCC
GCGACGAAGTGCGCGCCTGG

Product: acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MDFQFSEEQSMLRDTLARYLADHYDFEARRAAERSEAGWRPDCWRAFARELGILGAGFPEALGGLGGGAPEHMIVMEQFG
RHLVLEPYLSTVVLGGGALVHGNKVLAEQWVPAIIGGEATFGWAHAEPASRYCRHDVQSSATHDSRGYVLSGHKSVVAGA
PFATHFVVSARTSGKRRDTDGITLFWVPRDTPGVTLREYPTIDGNRAAEVLFDQARVPASHVIGTEGQALPLIEQLSDAA
LVALSAEANGTMARMLADTIDYARQRKQFGVAIGSFQVLQHRMADMAMQLEQSLALTQVAAMQAPAPERERALAACAAKA
QAGQAGRFIGQAAVQIHGGMGVTDELAVGHYFKRVTAIDLQFGSAEHHLGRYADLLYPAAA

Sequences:

>Translated_381_residues
MDFQFSEEQSMLRDTLARYLADHYDFEARRAAERSEAGWRPDCWRAFARELGILGAGFPEALGGLGGGAPEHMIVMEQFG
RHLVLEPYLSTVVLGGGALVHGNKVLAEQWVPAIIGGEATFGWAHAEPASRYCRHDVQSSATHDSRGYVLSGHKSVVAGA
PFATHFVVSARTSGKRRDTDGITLFWVPRDTPGVTLREYPTIDGNRAAEVLFDQARVPASHVIGTEGQALPLIEQLSDAA
LVALSAEANGTMARMLADTIDYARQRKQFGVAIGSFQVLQHRMADMAMQLEQSLALTQVAAMQAPAPERERALAACAAKA
QAGQAGRFIGQAAVQIHGGMGVTDELAVGHYFKRVTAIDLQFGSAEHHLGRYADLLYPAAA
>Mature_381_residues
MDFQFSEEQSMLRDTLARYLADHYDFEARRAAERSEAGWRPDCWRAFARELGILGAGFPEALGGLGGGAPEHMIVMEQFG
RHLVLEPYLSTVVLGGGALVHGNKVLAEQWVPAIIGGEATFGWAHAEPASRYCRHDVQSSATHDSRGYVLSGHKSVVAGA
PFATHFVVSARTSGKRRDTDGITLFWVPRDTPGVTLREYPTIDGNRAAEVLFDQARVPASHVIGTEGQALPLIEQLSDAA
LVALSAEANGTMARMLADTIDYARQRKQFGVAIGSFQVLQHRMADMAMQLEQSLALTQVAAMQAPAPERERALAACAAKA
QAGQAGRFIGQAAVQIHGGMGVTDELAVGHYFKRVTAIDLQFGSAEHHLGRYADLLYPAAA

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=375, Percent_Identity=27.7333333333333, Blast_Score=129, Evalue=3e-30,
Organism=Homo sapiens, GI4557233, Length=322, Percent_Identity=28.8819875776398, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI226958414, Length=340, Percent_Identity=27.3529411764706, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI4557235, Length=364, Percent_Identity=27.4725274725275, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI76496475, Length=364, Percent_Identity=27.4725274725275, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI4501857, Length=353, Percent_Identity=23.7960339943343, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI21361497, Length=324, Percent_Identity=25.9259259259259, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI7656849, Length=269, Percent_Identity=28.6245353159851, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI187960098, Length=390, Percent_Identity=24.1025641025641, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI4557231, Length=390, Percent_Identity=23.3333333333333, Blast_Score=89, Evalue=9e-18,
Organism=Homo sapiens, GI4501859, Length=361, Percent_Identity=23.8227146814404, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI38505218, Length=293, Percent_Identity=24.5733788395904, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI87081958, Length=366, Percent_Identity=25.1366120218579, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786223, Length=375, Percent_Identity=24.5333333333333, Blast_Score=81, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17538396, Length=380, Percent_Identity=26.3157894736842, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17569725, Length=364, Percent_Identity=27.1978021978022, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17508101, Length=385, Percent_Identity=26.7532467532467, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17570075, Length=352, Percent_Identity=26.4204545454545, Blast_Score=99, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI71985184, Length=311, Percent_Identity=26.0450160771704, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17534899, Length=361, Percent_Identity=24.6537396121884, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17506239, Length=337, Percent_Identity=25.5192878338279, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71985192, Length=287, Percent_Identity=25.4355400696864, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17533517, Length=326, Percent_Identity=22.3926380368098, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71982178, Length=238, Percent_Identity=26.4705882352941, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17505929, Length=318, Percent_Identity=25.7861635220126, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71990804, Length=270, Percent_Identity=26.2962962962963, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17551932, Length=320, Percent_Identity=24.6875, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI32563615, Length=236, Percent_Identity=26.6949152542373, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI21356377, Length=320, Percent_Identity=29.6875, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI21355753, Length=330, Percent_Identity=28.1818181818182, Blast_Score=104, Evalue=9e-23,
Organism=Drosophila melanogaster, GI24646207, Length=329, Percent_Identity=26.4437689969605, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24666513, Length=392, Percent_Identity=25, Blast_Score=101, Evalue=7e-22,
Organism=Drosophila melanogaster, GI281363737, Length=354, Percent_Identity=25.1412429378531, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24660351, Length=371, Percent_Identity=24.2587601078167, Blast_Score=92, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 41107; Mature: 41107

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFQFSEEQSMLRDTLARYLADHYDFEARRAAERSEAGWRPDCWRAFARELGILGAGFPE
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHH
ALGGLGGGAPEHMIVMEQFGRHLVLEPYLSTVVLGGGALVHGNKVLAEQWVPAIIGGEAT
HHHCCCCCCCHHHHHHHHCCCCEEEHHHHHHHEECCCEEEECCHHHHHHCCCCEECCCCC
FGWAHAEPASRYCRHDVQSSATHDSRGYVLSGHKSVVAGAPFATHFVVSARTSGKRRDTD
CCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECCCHHHEEEEEECCCCCCCCCC
GITLFWVPRDTPGVTLREYPTIDGNRAAEVLFDQARVPASHVIGTEGQALPLIEQLSDAA
CEEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHCCCHHHEECCCCCCCHHHHHHCCCE
LVALSAEANGTMARMLADTIDYARQRKQFGVAIGSFQVLQHRMADMAMQLEQSLALTQVA
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMQAPAPERERALAACAAKAQAGQAGRFIGQAAVQIHGGMGVTDELAVGHYFKRVTAIDL
HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHEEEECCCCCCHHHHHHHHHHHHEEEEE
QFGSAEHHLGRYADLLYPAAA
EECCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDFQFSEEQSMLRDTLARYLADHYDFEARRAAERSEAGWRPDCWRAFARELGILGAGFPE
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHH
ALGGLGGGAPEHMIVMEQFGRHLVLEPYLSTVVLGGGALVHGNKVLAEQWVPAIIGGEAT
HHHCCCCCCCHHHHHHHHCCCCEEEHHHHHHHEECCCEEEECCHHHHHHCCCCEECCCCC
FGWAHAEPASRYCRHDVQSSATHDSRGYVLSGHKSVVAGAPFATHFVVSARTSGKRRDTD
CCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECCCHHHEEEEEECCCCCCCCCC
GITLFWVPRDTPGVTLREYPTIDGNRAAEVLFDQARVPASHVIGTEGQALPLIEQLSDAA
CEEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHCCCHHHEECCCCCCCHHHHHHCCCE
LVALSAEANGTMARMLADTIDYARQRKQFGVAIGSFQVLQHRMADMAMQLEQSLALTQVA
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMQAPAPERERALAACAAKAQAGQAGRFIGQAAVQIHGGMGVTDELAVGHYFKRVTAIDL
HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHEEEECCCCCCHHHHHHHHHHHHEEEEE
QFGSAEHHLGRYADLLYPAAA
EECCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]