Click here to switch to the map view.

The map label for this gene is yciT [H]

Identifier: 71911561

GI number: 71911561

Start: 1709645

End: 1710394

Strand: Reverse

Name: yciT [H]

Synonym: M5005_Spy_1748

Alternate gene names: 71911561

Gene position: 1710394-1709645 (Counterclockwise)

Preceding gene: 71911564

Following gene: 71911560

Centisome position: 93.03

GC content: 41.2

Gene sequence:

>750_bases
ATGATGAATCGATTAGAACGTATTATTCAACTGGTTTCCCAGAAGAAAAAAATAGATGTTAACAGTTTATCAGAGCAATT
AGACGTTTCGAAAGTAACCATTCGAAAAGACCTTGATAAGCTTGAAAGTAAGGGCTTGTTGCGACGGGAACATGGCTATG
CGGTGCTAAACAGTGGCGATGACCTCAATGTACGCTTGTCCTACAATTACAACATAAAGCGACGGATTGCAGAAAAAGCA
GCTGAATTGGTACAAGACAACGATACCATTATGATTGAATCTGGCTCAACCTGTGCCCTTTTGGCAGAAGTGCTTTGCCA
GACCAAACGAAATATTAAAGTCATTACCAATTCGTGCTTCATTGCCAACTACATTCGTCAATATAGTAGCTGTCAAATCA
TTTTACTGGGCGGTTATTACCAGCCCAATTCAGAGGTGACTGTTGGTCCTTTATTGAAAGAAATGATATCCCTTTTTCAT
GTCAATCGTGTCTTTGTTGGAACAGACGGTTTCAACAAAGATCTTGGCTTTATGGGCAAGGACATGATGCGCTCAGAAGG
GGTGCGTTACATGGCAGATGCTGCTGAGGAAGTGGTGATTCTGACCGATTCCAGCAAGTTTTCAAAAACCAGTCTGGTAC
ACCAGTTGTCATTAGCTGATGTCAATCGCGTCATTACAGACCAAGCACTAGACAAGCAAACACAAGAGTTATTAAGTGCT
AGTGGTCTTGTTCTTGATTTTGTTTCTTAG

Upstream 100 bases:

>100_bases
AAAACTATCATACCAGATAAACGTAAATAAATCAATTACGAATGAAAGTAAATATCCCTTTTCTTTTAAGAAAATAACTG
GTACAATGAAAGGGAGGTGA

Downstream 100 bases:

>100_bases
AAAATAGGTGGCTAGATGAAAGAAGAACGCAGACGGCTCCTTGCCAAGGTGGCTTACTTGCATTATGTTCAAGGCAAGAG
CCAAACCTTGATTTCAAAGG

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MMNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRLSYNYNIKRRIAEKA
AELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFH
VNRVFVGTDGFNKDLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSA
SGLVLDFVS

Sequences:

>Translated_249_residues
MMNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRLSYNYNIKRRIAEKA
AELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFH
VNRVFVGTDGFNKDLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSA
SGLVLDFVS
>Mature_249_residues
MMNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRLSYNYNIKRRIAEKA
AELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFH
VNRVFVGTDGFNKDLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSA
SGLVLDFVS

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787540, Length=230, Percent_Identity=44.3478260869565, Blast_Score=194, Evalue=4e-51,
Organism=Escherichia coli, GI1789059, Length=244, Percent_Identity=31.5573770491803, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789519, Length=246, Percent_Identity=28.0487804878049, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1788069, Length=232, Percent_Identity=31.0344827586207, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1789829, Length=247, Percent_Identity=27.9352226720648, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1789170, Length=231, Percent_Identity=27.7056277056277, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87082344, Length=230, Percent_Identity=24.7826086956522, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790635, Length=246, Percent_Identity=26.4227642276423, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI226510968, Length=243, Percent_Identity=25.5144032921811, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790753, Length=252, Percent_Identity=24.6031746031746, Blast_Score=85, Evalue=6e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27967; Mature: 27967

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCC
DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF
CEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECHHH
IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK
HHHHHHHHCCCEEEEEECEECCCCCEEHHHHHHHHHHHHHHCEEEEECCCCCCCHHHCCH
DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSA
HHHHHCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGLVLDFVS
CCCEEEECC
>Mature Secondary Structure
MMNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCC
DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF
CEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECHHH
IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK
HHHHHHHHCCCEEEEEECEECCCCCEEHHHHHHHHHHHHHHCEEEEECCCCCCCHHHCCH
DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSA
HHHHHCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGLVLDFVS
CCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]