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The map label for this gene is ybeY [C]

Identifier: 71910201

GI number: 71910201

Start: 390192

End: 390740

Strand: Direct

Name: ybeY [C]

Synonym: M5005_Spy_0388

Alternate gene names: 71910201

Gene position: 390192-390740 (Clockwise)

Preceding gene: 71910200

Following gene: 71910202

Centisome position: 21.22

GC content: 40.07

Gene sequence:

>549_bases
GTGCCCAACATACCAAATGAGGTGGGCAGCCCTTCCCTAACAATTAACCTTATGTATATCGAGATGATTGACGAAACGGG
ACAAGTTTCGCAAGAGATTATGGAGCAAACACTTGATTTGCTCAATTTTGCTGCTCAAAAGACGGGCAAAGAAGAAAAAG
AAATGTCTGTGACCTTTGTGACCAATGAAAGAAGTCATGAACTCAACTTAGAATACCGAGATACTGATCGTCCAACAGAT
GTGATTTCTCTAGAATATAAGCCAGAAACGCCTATTTTATTTAGTCAAGAGGATTTGGCTGCTGATCCTAGTTTGGCAGA
GATGATGGCAGAGTTTGATGCTTATATTGGCGAATTGTTTATTTCTATTGACAAGGCGCGTGAGCAGTCCCAAGAATATG
GGCACTCTTTTGAGCGTGAAATGGGATTTTTGGCTGTTCATGGATTCTTACATATTAATGGGTATGATCACTACACCCTT
GAAGAAGAAAAAGAGATGTTTACCTTACAGGAAGAGATTTTGACTGCTTATGGCCTTACACGACAATAA

Upstream 100 bases:

>100_bases
TTTACCTAGCATTCCCATTTTTAAGGGGCTTGTGGTATAATGGGTAAATAACAAATGCTGATTGAAAGGATAAGGGAAAT
TATCTGTCAGATAATAATGG

Downstream 100 bases:

>100_bases
TACCACCAAACGGAAATGGAAAAACAGAACCATTACCTCAAGCTTGGAGTTTGCCTTGACAGGGGTTTTCACAGCTTTTA
AGGAAGAACGCAATCTCAGA

Product: metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MPNIPNEVGSPSLTINLMYIEMIDETGQVSQEIMEQTLDLLNFAAQKTGKEEKEMSVTFVTNERSHELNLEYRDTDRPTD
VISLEYKPETPILFSQEDLAADPSLAEMMAEFDAYIGELFISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTL
EEEKEMFTLQEEILTAYGLTRQ

Sequences:

>Translated_182_residues
MPNIPNEVGSPSLTINLMYIEMIDETGQVSQEIMEQTLDLLNFAAQKTGKEEKEMSVTFVTNERSHELNLEYRDTDRPTD
VISLEYKPETPILFSQEDLAADPSLAEMMAEFDAYIGELFISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTL
EEEKEMFTLQEEILTAYGLTRQ
>Mature_181_residues
PNIPNEVGSPSLTINLMYIEMIDETGQVSQEIMEQTLDLLNFAAQKTGKEEKEMSVTFVTNERSHELNLEYRDTDRPTDV
ISLEYKPETPILFSQEDLAADPSLAEMMAEFDAYIGELFISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLE
EEKEMFTLQEEILTAYGLTRQ

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=129, Percent_Identity=34.8837209302326, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 20976; Mature: 20844

Theoretical pI: Translated: 3.99; Mature: 3.99

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNIPNEVGSPSLTINLMYIEMIDETGQVSQEIMEQTLDLLNFAAQKTGKEEKEMSVTFV
CCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEE
TNERSHELNLEYRDTDRPTDVISLEYKPETPILFSQEDLAADPSLAEMMAEFDAYIGELF
ECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEECCHHCCCCCHHHHHHHHHHHHHHHHH
ISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAYGLT
HHHHHHHHHHHHHCHHHHHHCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
RQ
CC
>Mature Secondary Structure 
PNIPNEVGSPSLTINLMYIEMIDETGQVSQEIMEQTLDLLNFAAQKTGKEEKEMSVTFV
CCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEE
TNERSHELNLEYRDTDRPTDVISLEYKPETPILFSQEDLAADPSLAEMMAEFDAYIGELF
ECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEECCHHCCCCCHHHHHHHHHHHHHHHHH
ISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAYGLT
HHHHHHHHHHHHHCHHHHHHCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
RQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA