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The map label for this gene is oppB [H]

Identifier: 71910064

GI number: 71910064

Start: 259540

End: 261054

Strand: Direct

Name: oppB [H]

Synonym: M5005_Spy_0250

Alternate gene names: 71910064

Gene position: 259540-261054 (Clockwise)

Preceding gene: 71910063

Following gene: 71910065

Centisome position: 14.12

GC content: 36.9

Gene sequence:

>1515_bases
TTGAGGACAACTATGAAAAAATATATTTTAAACCGTATCATGCGATCGTTAGTGTCGGTAGTTCTGGTAACGGCTTTAAC
ATACACCATCGTATATACTCTAGTACCTACCAGCCTTATCTTTAAACAAGACCCTAATTATAATAAAATGACAACAACAC
CAGATAAAAAAGTAGCGTATGAAAATCTAACTTTTCAACGTATGGGTTATGTCAATTATTTTTCAAGCAAAGAATTAAAA
GATAATGCTTCTAAAGTAGATAGTAGTGTAACGACAGAAGCAACTAGTGCTAACAAAGCTATCTATGAGAAGTATATTGA
TTCTCTTGGCAATGGCTGGCAGCTAAAACGCTTCCCCACTAGCAAACAGTTTTATGCAATTCGCAATATCCCTATTTACG
AACGTGTTTGGAACTTTTTCTCAAATCTAGTTGTTATTGATCACCCTTGGAAGATTCAGGATAAAGATAATCCAAAATTA
GCTAGGTATATTCGTCTAGAAAAAGATAAATCAGTTGGCTGGTCACTTGTTGGTTCGGGGACAAAACATAAGTATCTCCT
CTATACTAACGGAAAATTTCCTTATCTTCACCAAAACTTTGTTACCTTAAACTTAGGGACATCTTATCCAACATACAGCA
ATATTCCTGTTCTTCAGGTCATTTCACAAGGGCAAGGACGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTCACT
AAGAAATCGTCAGTGGATATCTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATCACCAAGGTAAACTATGG
TAAGGGAGATTCCTACACTAAAACCATCAATAATTATGTCGACCCATCAATGATTCACAATTCTTTTGTAATTGGTTTTT
TTGGTGTTATGTTTTCCTATATCGTTGGTTTGCCTCTTGGTTTATTTATGGCTCGGTTTAAAAATACCTATTTTGACAGT
TTCTCAACAGCGACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTTATCTATGTTGTTCGCTTCCTAGGTGGCAT
GGTTGGTTTACCAGATAGTTTCCCAATGCTGGGGGCATCTGATCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAA
TTTTAAATATTCCAACTACGGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCCAGCGATTGGGTACGTTTTGCG
CGTTCAAAAGGATTATCAGAATCTGAAATTTACAGAGGGCATCTCTTCAAAAATGCCATGGTCCCAATTGTGTCAGGGGT
TCCTGCAAGTATTATCCTTGCTATTGGTGGTGCAACATTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGT
TAATTGATTCTATTAAATCTGCTAACAATTCTATGATTGTTGGATTAACCTTTATCTTCACTGTCTTGTCAATTGTTTCA
CTTTTACTAGGAGATATTGTCATGACCCTTGTCGATCCACGTATTAAATTGTCAACAAAAAAAGGAGGTAAGTAA

Upstream 100 bases:

>100_bases
TCAAATGCAAAATATGCTGAGAAGTTAGCTGATCACGTTGAAAAATAAAACGATGTTCAAAAGAACTTTCTCGTTTATGT
GAGGGAGTTCTTTTGAACTA

Downstream 100 bases:

>100_bases
TGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTAT
TCTTACTGGAAATCAGTGTT

Product: oligopeptide transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 504; Mature: 504

Protein sequence:

>504_residues
MRTTMKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELK
DNASKVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPTSKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKL
ARYIRLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVT
KKSSVDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDS
FSTATMTFMLALPSIAVIYVVRFLGGMVGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFA
RSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVS
LLLGDIVMTLVDPRIKLSTKKGGK

Sequences:

>Translated_504_residues
MRTTMKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELK
DNASKVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPTSKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKL
ARYIRLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVT
KKSSVDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDS
FSTATMTFMLALPSIAVIYVVRFLGGMVGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFA
RSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVS
LLLGDIVMTLVDPRIKLSTKKGGK
>Mature_504_residues
MRTTMKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELK
DNASKVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPTSKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKL
ARYIRLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVT
KKSSVDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDS
FSTATMTFMLALPSIAVIYVVRFLGGMVGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFA
RSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVS
LLLGDIVMTLVDPRIKLSTKKGGK

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=202, Percent_Identity=27.2277227722772, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789965, Length=235, Percent_Identity=27.2340425531915, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788504, Length=282, Percent_Identity=26.9503546099291, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1789888, Length=195, Percent_Identity=27.1794871794872, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787761, Length=230, Percent_Identity=24.3478260869565, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787497, Length=134, Percent_Identity=26.865671641791, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 56571; Mature: 56571

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTTMKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHH
ENLTFQRMGYVNYFSSKELKDNASKVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPT
HCCCHHHHCHHHHCCCCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCC
SKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKLARYIRLEKDKSVGWSLVGSG
CCCEEEEECCCHHHHHHHHHCCEEEEECCEECCCCCCCHHHHHEEEECCCCCCCEEECCC
TKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVT
CCEEEEEEECCCCCEEECCEEEEECCCCCCCCCCCHHHHHHHCCCCCCHHHHCCCCCCCC
KKSSVDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSY
CCCCCHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
IVGLPLGLFMARFKNTYFDSFSTATMTFMLALPSIAVIYVVRFLGGMVGLPDSFPMLGAS
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCCH
VPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVS
HHHHCCCCHHEEEEECCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHH
LLLGDIVMTLVDPRIKLSTKKGGK
HHHHHHHHHHCCCCEEECCCCCCC
>Mature Secondary Structure
MRTTMKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHH
ENLTFQRMGYVNYFSSKELKDNASKVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPT
HCCCHHHHCHHHHCCCCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCC
SKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKLARYIRLEKDKSVGWSLVGSG
CCCEEEEECCCHHHHHHHHHCCEEEEECCEECCCCCCCHHHHHEEEECCCCCCCEEECCC
TKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVT
CCEEEEEEECCCCCEEECCEEEEECCCCCCCCCCCHHHHHHHCCCCCCHHHHCCCCCCCC
KKSSVDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSY
CCCCCHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
IVGLPLGLFMARFKNTYFDSFSTATMTFMLALPSIAVIYVVRFLGGMVGLPDSFPMLGAS
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCCH
VPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVS
HHHHCCCCHHEEEEECCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHH
LLLGDIVMTLVDPRIKLSTKKGGK
HHHHHHHHHHCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2352474; 11463916 [H]