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The map label for this gene is yabF [H]

Identifier: 71910035

GI number: 71910035

Start: 226198

End: 226788

Strand: Direct

Name: yabF [H]

Synonym: M5005_Spy_0221

Alternate gene names: 71910035

Gene position: 226198-226788 (Clockwise)

Preceding gene: 71910034

Following gene: 71910036

Centisome position: 12.3

GC content: 44.33

Gene sequence:

>591_bases
ATGCAAAGAGGGTATTCAAGCTTGACTGAAAAAATTAATATTCAAGAGGTTCTTGTTGTAGAAGGCAAGGACGACACGGC
TAACCTACGCCGTTTTTACGAGGTGGATACCTATGAGACTAGAGGCTCTGCTATCACTGAAGAAGATTTAGAACGAATCA
ATCGCCTAAACGATTTGCGTGGTGTTATCGTTTTAACAGACCCAGATTATAATGGTGAGCGCATTCGTAAGCTCATTATG
GCTGCTGTGCCAACAGCTCGTCATGCCTTTTTAAACCGAAACGAGGCGGTTCCGAGTTCTAAGAGTAAGGGTCGTTCCTT
AGGGGTTGAACATGCCAATTTTGAGGATCTCCAAAAGGCACTTGCTCATGTCACTCAGCAATATGATGATGAGTCTTATT
TTGACATTCGTCAAACAGACCTGATTCGTCTAGGGCTTTTAATGGCGTCAGATAGCCGTAAACGCAGGGAATACTTGGGT
GAAAAGCTCCGCATCGGTTATGCCAACGGCAAACAACTGCTCAAGCGCCTCGAATTATTTGGCATTACCCTAGCAGAAGT
GGAAGAAGTGATGGAGACATATGAGGAGTAA

Upstream 100 bases:

>100_bases
GGCAAACAAAATCATACAGCTTATACCCGCTATGTGGTTGATAAAATCGCAGAGCTACGGGGGATGACTGTGGAAGAAGT
TGCAAAAGCAACGACTGCTA

Downstream 100 bases:

>100_bases
AGAGTACAATAAAATATAACAGCCCCATTAACTGAATGGCGTGTCCTGGCAAAAAAGTTTAGGCTAGTGGTTCAAATGCC
AAAAAGAAAGTGATCATAAA

Product: ribonuclease M5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MQRGYSSLTEKINIQEVLVVEGKDDTANLRRFYEVDTYETRGSAITEEDLERINRLNDLRGVIVLTDPDYNGERIRKLIM
AAVPTARHAFLNRNEAVPSSKSKGRSLGVEHANFEDLQKALAHVTQQYDDESYFDIRQTDLIRLGLLMASDSRKRREYLG
EKLRIGYANGKQLLKRLELFGITLAEVEEVMETYEE

Sequences:

>Translated_196_residues
MQRGYSSLTEKINIQEVLVVEGKDDTANLRRFYEVDTYETRGSAITEEDLERINRLNDLRGVIVLTDPDYNGERIRKLIM
AAVPTARHAFLNRNEAVPSSKSKGRSLGVEHANFEDLQKALAHVTQQYDDESYFDIRQTDLIRLGLLMASDSRKRREYLG
EKLRIGYANGKQLLKRLELFGITLAEVEEVMETYEE
>Mature_196_residues
MQRGYSSLTEKINIQEVLVVEGKDDTANLRRFYEVDTYETRGSAITEEDLERINRLNDLRGVIVLTDPDYNGERIRKLIM
AAVPTARHAFLNRNEAVPSSKSKGRSLGVEHANFEDLQKALAHVTQQYDDESYFDIRQTDLIRLGLLMASDSRKRREYLG
EKLRIGYANGKQLLKRLELFGITLAEVEEVMETYEE

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 22589; Mature: 22589

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRGYSSLTEKINIQEVLVVEGKDDTANLRRFYEVDTYETRGSAITEEDLERINRLNDLR
CCCCHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
GVIVLTDPDYNGERIRKLIMAAVPTARHAFLNRNEAVPSSKSKGRSLGVEHANFEDLQKA
CEEEEECCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
LAHVTQQYDDESYFDIRQTDLIRLGLLMASDSRKRREYLGEKLRIGYANGKQLLKRLELF
HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCHHHEECCCCHHHHHHHHHHH
GITLAEVEEVMETYEE
CCHHHHHHHHHHHHCC
>Mature Secondary Structure
MQRGYSSLTEKINIQEVLVVEGKDDTANLRRFYEVDTYETRGSAITEEDLERINRLNDLR
CCCCHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
GVIVLTDPDYNGERIRKLIMAAVPTARHAFLNRNEAVPSSKSKGRSLGVEHANFEDLQKA
CEEEEECCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
LAHVTQQYDDESYFDIRQTDLIRLGLLMASDSRKRREYLGEKLRIGYANGKQLLKRLELF
HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCHHHEECCCCHHHHHHHHHHH
GITLAEVEEVMETYEE
CCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]