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The map label for this gene is ytpR [H]

Identifier: 71909915

GI number: 71909915

Start: 111517

End: 112143

Strand: Direct

Name: ytpR [H]

Synonym: M5005_Spy_0101

Alternate gene names: 71909915

Gene position: 111517-112143 (Clockwise)

Preceding gene: 71909914

Following gene: 71909916

Centisome position: 6.07

GC content: 42.26

Gene sequence:

>627_bases
ATGATTTTTGCATACAATAAAGAACAAGTTGGCGATGTCTTGATGGTTATCTTACAAGACACCAAAGATATCAAACGTCA
AGTAGAACGAAAAGGCAAAGTAGCCCGTGTTTTTGCAGAAGAAAGCGGCAAAACCCTTGCTTGGAATATCTTTGAAGCGT
CAAGCTTGATTACTATTGAAGGCAATGGACAGATTTTTTTGACAGACGAGAACCTTGCAAGATTAAATGCAGAGCTTGCT
AAGGAAGGATTTTCAGAAAGGCTTGAACCGATTGTGGGACCTGTTTTTGTGGTTGGTCAAATTGTTGAGATGGTGGCTCA
TCCAGATAGCGACCATCTTAATATCTGCCAAGTGGCTATTGGTGAAGATCAAACGGTTCAAATCGTAGCGGGCGCACCAA
ATGCTGCGCTTGGTTTAAAAACGATTGTTGCCTTACCAGGTGCTATAATGCCAAATGGTAGTCTGATTTTCCCAGGAAAA
TTGCGTGGTGAAGAAAGTTATGGTATGATGTGCTCTCCTCGTGAGTTAGCCTTGCCAAATGCACCGCAAAAACGTGGCAT
TATTGAATTTGATGAGTCAGCTGTGGTAGGAGAAGCTTTTGACCCAGCCAAACATTGGAAAGGTTAG

Upstream 100 bases:

>100_bases
AAGGTCAGGAAGTAGGGCGTCTGGTTAACAAAATGAGAAAGACAAAAACTGAGATTATGCATTTTTTAGCTGCTTATCAA
TAAGAAAAGAGGAAGAATAA

Downstream 100 bases:

>100_bases
AAAAACCAGCTGAAATAAGACTGTATTTAACTAAATGACCAGAAAAAAAGGATTAGGAGCCCTTAATCCTTTTTTCTTAT
GTTTTCAAAAACGTTTAAAA

Product: tRNA-binding domain-containing protein

Products: AMP; diphosphate; L-phenylalanyl-tRNAPhe [C]

Alternate protein names: Partial phenylalanyl-tRNA synthetase; Partial PheRS; pFRS [H]

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MIFAYNKEQVGDVLMVILQDTKDIKRQVERKGKVARVFAEESGKTLAWNIFEASSLITIEGNGQIFLTDENLARLNAELA
KEGFSERLEPIVGPVFVVGQIVEMVAHPDSDHLNICQVAIGEDQTVQIVAGAPNAALGLKTIVALPGAIMPNGSLIFPGK
LRGEESYGMMCSPRELALPNAPQKRGIIEFDESAVVGEAFDPAKHWKG

Sequences:

>Translated_208_residues
MIFAYNKEQVGDVLMVILQDTKDIKRQVERKGKVARVFAEESGKTLAWNIFEASSLITIEGNGQIFLTDENLARLNAELA
KEGFSERLEPIVGPVFVVGQIVEMVAHPDSDHLNICQVAIGEDQTVQIVAGAPNAALGLKTIVALPGAIMPNGSLIFPGK
LRGEESYGMMCSPRELALPNAPQKRGIIEFDESAVVGEAFDPAKHWKG
>Mature_208_residues
MIFAYNKEQVGDVLMVILQDTKDIKRQVERKGKVARVFAEESGKTLAWNIFEASSLITIEGNGQIFLTDENLARLNAELA
KEGFSERLEPIVGPVFVVGQIVEMVAHPDSDHLNICQVAIGEDQTVQIVAGAPNAALGLKTIVALPGAIMPNGSLIFPGK
LRGEESYGMMCSPRELALPNAPQKRGIIEFDESAVVGEAFDPAKHWKG

Specific function: Unknown

COG id: COG0073

COG function: function code R; EMAP domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 tRNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788006, Length=91, Percent_Identity=42.8571428571429, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR002547 [H]

Pfam domain/function: PF01588 tRNA_bind [H]

EC number: 6.1.1.20 [C]

Molecular weight: Translated: 22570; Mature: 22570

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS50886 TRBD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFAYNKEQVGDVLMVILQDTKDIKRQVERKGKVARVFAEESGKTLAWNIFEASSLITIE
CEEECCHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCEEEEEE
GNGQIFLTDENLARLNAELAKEGFSERLEPIVGPVFVVGQIVEMVAHPDSDHLNICQVAI
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
GEDQTVQIVAGAPNAALGLKTIVALPGAIMPNGSLIFPGKLRGEESYGMMCSPRELALPN
CCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCEECCHHCCCCC
APQKRGIIEFDESAVVGEAFDPAKHWKG
CCCCCCCEEECCCEEECCCCCCHHHCCC
>Mature Secondary Structure
MIFAYNKEQVGDVLMVILQDTKDIKRQVERKGKVARVFAEESGKTLAWNIFEASSLITIE
CEEECCHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCEEEEEE
GNGQIFLTDENLARLNAELAKEGFSERLEPIVGPVFVVGQIVEMVAHPDSDHLNICQVAI
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
GEDQTVQIVAGAPNAALGLKTIVALPGAIMPNGSLIFPGKLRGEESYGMMCSPRELALPN
CCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCEECCHHCCCCC
APQKRGIIEFDESAVVGEAFDPAKHWKG
CCCCCCCEEECCCEEECCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Mg2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): 0.125 {2'-deoxyadenosine} 0.2 {2-chloroadenosine} 0.11 {2-chloroadenosine} 0.009 {ATP}} [C]

Substrates: ATP; @PHEN01.txt*phenylalanine!; tRNAPhe [C]

Specific reaction: ATP + @PHEN01.txt*phenylalanine! + tRNAPhe = AMP + diphosphate + L-phenylalanyl-tRNAPhe [C]

General reaction: Aminoacylation; Esterification [C]

Inhibitor: 3'-Deoxyadenosine 5'-triphosphate; 3'-Methyl adenosine 5'-triphosphate; Zn2+ [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]