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The map label for this gene is sigZ [H]

Identifier: 71908247

GI number: 71908247

Start: 2834071

End: 2834628

Strand: Reverse

Name: sigZ [H]

Synonym: Daro_2634

Alternate gene names: 71908247

Gene position: 2834628-2834071 (Counterclockwise)

Preceding gene: 71908248

Following gene: 71908244

Centisome position: 62.98

GC content: 60.75

Gene sequence:

>558_bases
ATGGGCGTGCCCTGCCTGCTCACTGCCTGGGCGGCCCATGAGGCTGAATTGCGCGGCTTTTTGCGCCACCGCTCCGGTTT
GCTCGAAGAAGCTGATGACCTGTTGCAGGAAGTCTTCATCCGGGCACTGCGTCAGGACACGCAGTTCTGCATCATCGAAA
ACCCCAGGGCATGGCTCTACCAGGTCGCCCGCAATATTCTGGCCGATCGGTTCCGACATGCCCACGAGCATGTGCCGCTG
CCCGATGACGTTCCCGAGGTGTTGCTCGATGAAGCACCCACGGTCGACGCTTTGAGCCAATGCCTGCCGAGGGTGCTCAC
CGAACTGTCGGCTGATGACCGACTGGCGATCACTTTCTGCGACATCGAAGGAAATTCGCAGCAGGCCCTGGCTGAACATC
TCGGCATTTCCCTGCCGGGAGCAAAATCCAGAATCCAGCGGGCCCGGCAGCGATTGCGTGAGCAGTTGGTCTGTGCCTGC
CAGGTCACCTTCGACGACAACGGGGATGTCTGCTGCTTCGTTCCACGGCCACCGCTAACGGACTCGCCGGACAAGTAA

Upstream 100 bases:

>100_bases
TTATTGCATGAGAACCTCAAGAAATACGGGACGGTTTTCAATACGGTTTCGGCCGGCTGTGATCTGACCGGCACCCTGCG
CCGTGGGCCGCCCGACTAGC

Downstream 100 bases:

>100_bases
CGCTGGCGCAACTCGATTTTTTACCCAAAATCGCAGTTGACCGTAGCAATCGTCATCTCCGGCAGTGTCAAATCGACAGC
GATTCTGCAATGAGTTGTGA

Product: sigma-70 region 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MGVPCLLTAWAAHEAELRGFLRHRSGLLEEADDLLQEVFIRALRQDTQFCIIENPRAWLYQVARNILADRFRHAHEHVPL
PDDVPEVLLDEAPTVDALSQCLPRVLTELSADDRLAITFCDIEGNSQQALAEHLGISLPGAKSRIQRARQRLREQLVCAC
QVTFDDNGDVCCFVPRPPLTDSPDK

Sequences:

>Translated_185_residues
MGVPCLLTAWAAHEAELRGFLRHRSGLLEEADDLLQEVFIRALRQDTQFCIIENPRAWLYQVARNILADRFRHAHEHVPL
PDDVPEVLLDEAPTVDALSQCLPRVLTELSADDRLAITFCDIEGNSQQALAEHLGISLPGAKSRIQRARQRLREQLVCAC
QVTFDDNGDVCCFVPRPPLTDSPDK
>Mature_184_residues
GVPCLLTAWAAHEAELRGFLRHRSGLLEEADDLLQEVFIRALRQDTQFCIIENPRAWLYQVARNILADRFRHAHEHVPLP
DDVPEVLLDEAPTVDALSQCLPRVLTELSADDRLAITFCDIEGNSQQALAEHLGISLPGAKSRIQRARQRLREQLVCACQ
VTFDDNGDVCCFVPRPPLTDSPDK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014304
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20817; Mature: 20686

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVPCLLTAWAAHEAELRGFLRHRSGLLEEADDLLQEVFIRALRQDTQFCIIENPRAWLY
CCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
QVARNILADRFRHAHEHVPLPDDVPEVLLDEAPTVDALSQCLPRVLTELSADDRLAITFC
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE
DIEGNSQQALAEHLGISLPGAKSRIQRARQRLREQLVCACQVTFDDNGDVCCFVPRPPLT
ECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCC
DSPDK
CCCCC
>Mature Secondary Structure 
GVPCLLTAWAAHEAELRGFLRHRSGLLEEADDLLQEVFIRALRQDTQFCIIENPRAWLY
CCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
QVARNILADRFRHAHEHVPLPDDVPEVLLDEAPTVDALSQCLPRVLTELSADDRLAITFC
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE
DIEGNSQQALAEHLGISLPGAKSRIQRARQRLREQLVCACQVTFDDNGDVCCFVPRPPLT
ECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCC
DSPDK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]