| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is 71908233
Identifier: 71908233
GI number: 71908233
Start: 2820251
End: 2821549
Strand: Reverse
Name: 71908233
Synonym: Daro_2620
Alternate gene names: NA
Gene position: 2821549-2820251 (Counterclockwise)
Preceding gene: 71908234
Following gene: 71908232
Centisome position: 62.69
GC content: 65.97
Gene sequence:
>1299_bases ATGTCTCGAAGCAAATCGGTTTCACGAACCACCTTTTTACCGGCCCGCCTACTCGTGGCCGGGCTGTGCTCGCTCGCTGC GCTAGCGACCGGCGACTTATGGGCGCAATCGACGCCAGCCCCCGCTGGTGCCTTGATTACCCTGTCGCAAGCCTTTGAGG CTGCTTGGGCACGGCAACCCGAAGCGCAATCCCTCGATCTGCGGCGCGATGCTGCCGAAGCGCGTCGGCGAGTTGCCGGT AGTTGGACGGCCCAACCGCCTTCGCTGGATTTGTCTGGCAAGACCGACCAACTGAGCAAGAATCAAGGTAGCCGTGAATA CATGGCCGGCGTCGCCTTACCCCTGTGGCTGCCGGGCGAACGCTCTCGTCAGGGCGCCTTGGCCGATGCTGAATCCAAAG CTCTGGATAGCCGGGTGACGGCCGCCCAACTGCGCACTGCCGCCGCCGTGCGTGATGCCTGGTGGAACTGGCAGCGGGCC CGTGGGGAACAGTCGCTGGCCCGCGAACGCATGGTCAGCGCGCAAAAACTGGCAGAAGATGTCCGCCGCCGAACCAAGGC CGGTGACCTGGCCCGCTCGGACCAGCATCAGGCCGATGGCGCGGCGGCCAGCGCCGAGGTAACGCTGGCGGAAAGCGCCA GCCTGCTGGCCGCCAGCACTCAGCAACTGCGCGCCTTGATTGGCAAGCTACCGGACGAGAATGCAGCCGACGGACCGGAA ACCCCGCCGGCGGTGCCTGCCGACTTCACCTCCTTGGATGCGACCCACCCGGCGGTCGTCGAACTGTTCGACCGGGCCGA AGTCGCCCGCCGCAGCGCCGATCTGGCCAGCGTGCAGACTAGGAACAATCCCGAACTGTTGTTGGCCACTACCCGCGAGC GGGGCGCTTTCGGCGACGACTATCAGCAGACCGTCACGCTCGGCGTACGCATCCCGTTTGGTTCGGATAGCCGCAATCGC GCCAAACTCGGCTTGGCCCGCGCCGAAGCCCTCGAAACCGAGGGGCAACTTCGCCTCGAACGCGAGCGCCTGGCGGCTGA TCTGGAAGCGGCCCGGGTGCGCGTCGAATCGGGTCGCACCCAACTGGCGGCAGCCGAGAAACGCGCCCAACTGGCACGTG AGTCGCGGGGTTTCTTCGACAAGTCCTTCCGCTTGGGGGAGAGCGACCTGCCGACCCGCCTGCGCATCGAACTTGAATCC GTCGAAGCCGAACGGCAAAACGCTCGCACCCGAATTGACCTAGCCGCTGGGATCTCCGCCCTGCGCCAGGCCCTGGGCCT GCTCCCCGAACAAAAATGA
Upstream 100 bases:
>100_bases CCTTGCGGCTGTGGTGGACTGATCCGCCCTGACGCATTGCGACGCTTCCCGGTCGCACCTCGCCGATTCCCCGTGTGTCT TTTCATCACTGGAGAATTGG
Downstream 100 bases:
>100_bases GGAACCCGAACATGAGAACAACAAACACACTGGCCACTTTGGGATGGGCCGCCTGGATCGCCCTGGCCGCGCCACTGGCC TGGGCCGGTGACGGGCACGA
Product: Outer membrane efflux protein
Products: NA
Alternate protein names: Outer Membrane Protein; Outer Membrane Cation Efflux System Protein
Number of amino acids: Translated: 432; Mature: 431
Protein sequence:
>432_residues MSRSKSVSRTTFLPARLLVAGLCSLAALATGDLWAQSTPAPAGALITLSQAFEAAWARQPEAQSLDLRRDAAEARRRVAG SWTAQPPSLDLSGKTDQLSKNQGSREYMAGVALPLWLPGERSRQGALADAESKALDSRVTAAQLRTAAAVRDAWWNWQRA RGEQSLARERMVSAQKLAEDVRRRTKAGDLARSDQHQADGAAASAEVTLAESASLLAASTQQLRALIGKLPDENAADGPE TPPAVPADFTSLDATHPAVVELFDRAEVARRSADLASVQTRNNPELLLATTRERGAFGDDYQQTVTLGVRIPFGSDSRNR AKLGLARAEALETEGQLRLERERLAADLEAARVRVESGRTQLAAAEKRAQLARESRGFFDKSFRLGESDLPTRLRIELES VEAERQNARTRIDLAAGISALRQALGLLPEQK
Sequences:
>Translated_432_residues MSRSKSVSRTTFLPARLLVAGLCSLAALATGDLWAQSTPAPAGALITLSQAFEAAWARQPEAQSLDLRRDAAEARRRVAG SWTAQPPSLDLSGKTDQLSKNQGSREYMAGVALPLWLPGERSRQGALADAESKALDSRVTAAQLRTAAAVRDAWWNWQRA RGEQSLARERMVSAQKLAEDVRRRTKAGDLARSDQHQADGAAASAEVTLAESASLLAASTQQLRALIGKLPDENAADGPE TPPAVPADFTSLDATHPAVVELFDRAEVARRSADLASVQTRNNPELLLATTRERGAFGDDYQQTVTLGVRIPFGSDSRNR AKLGLARAEALETEGQLRLERERLAADLEAARVRVESGRTQLAAAEKRAQLARESRGFFDKSFRLGESDLPTRLRIELES VEAERQNARTRIDLAAGISALRQALGLLPEQK >Mature_431_residues SRSKSVSRTTFLPARLLVAGLCSLAALATGDLWAQSTPAPAGALITLSQAFEAAWARQPEAQSLDLRRDAAEARRRVAGS WTAQPPSLDLSGKTDQLSKNQGSREYMAGVALPLWLPGERSRQGALADAESKALDSRVTAAQLRTAAAVRDAWWNWQRAR GEQSLARERMVSAQKLAEDVRRRTKAGDLARSDQHQADGAAASAEVTLAESASLLAASTQQLRALIGKLPDENAADGPET PPAVPADFTSLDATHPAVVELFDRAEVARRSADLASVQTRNNPELLLATTRERGAFGDDYQQTVTLGVRIPFGSDSRNRA KLGLARAEALETEGQLRLERERLAADLEAARVRVESGRTQLAAAEKRAQLARESRGFFDKSFRLGESDLPTRLRIELESV EAERQNARTRIDLAAGISALRQALGLLPEQK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46753; Mature: 46622
Theoretical pI: Translated: 9.89; Mature: 9.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSKSVSRTTFLPARLLVAGLCSLAALATGDLWAQSTPAPAGALITLSQAFEAAWARQP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHEEHHHHHHHHHCCCC EAQSLDLRRDAAEARRRVAGSWTAQPPSLDLSGKTDQLSKNQGSREYMAGVALPLWLPGE CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHEEEEEECCCC RSRQGALADAESKALDSRVTAAQLRTAAAVRDAWWNWQRARGEQSLARERMVSAQKLAED CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH VRRRTKAGDLARSDQHQADGAAASAEVTLAESASLLAASTQQLRALIGKLPDENAADGPE HHHHHHHCCCCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC TPPAVPADFTSLDATHPAVVELFDRAEVARRSADLASVQTRNNPELLLATTRERGAFGDD CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC YQQTVTLGVRIPFGSDSRNRAKLGLARAEALETEGQLRLERERLAADLEAARVRVESGRT CCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCH QLAAAEKRAQLARESRGFFDKSFRLGESDLPTRLRIELESVEAERQNARTRIDLAAGISA HHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEHHHHHHHHHHCHHHHHHHHHHHH LRQALGLLPEQK HHHHHCCCCCCC >Mature Secondary Structure SRSKSVSRTTFLPARLLVAGLCSLAALATGDLWAQSTPAPAGALITLSQAFEAAWARQP CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHEEHHHHHHHHHCCCC EAQSLDLRRDAAEARRRVAGSWTAQPPSLDLSGKTDQLSKNQGSREYMAGVALPLWLPGE CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHEEEEEECCCC RSRQGALADAESKALDSRVTAAQLRTAAAVRDAWWNWQRARGEQSLARERMVSAQKLAED CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH VRRRTKAGDLARSDQHQADGAAASAEVTLAESASLLAASTQQLRALIGKLPDENAADGPE HHHHHHHCCCCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC TPPAVPADFTSLDATHPAVVELFDRAEVARRSADLASVQTRNNPELLLATTRERGAFGDD CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC YQQTVTLGVRIPFGSDSRNRAKLGLARAEALETEGQLRLERERLAADLEAARVRVESGRT CCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCH QLAAAEKRAQLARESRGFFDKSFRLGESDLPTRLRIELESVEAERQNARTRIDLAAGISA HHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEHHHHHHHHHHCHHHHHHHHHHHH LRQALGLLPEQK HHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA