Click here to switch to the map view.

The map label for this gene is zntR [H]

Identifier: 71907876

GI number: 71907876

Start: 2442196

End: 2442630

Strand: Reverse

Name: zntR [H]

Synonym: Daro_2256

Alternate gene names: 71907876

Gene position: 2442630-2442196 (Counterclockwise)

Preceding gene: 71907878

Following gene: 71907875

Centisome position: 54.27

GC content: 55.63

Gene sequence:

>435_bases
ATGATGAAAATTGGCGAACTCGCGCAAGCATCGCAATGTACGGTGGAAACAGTGCGCTACTACGAAAAGGAGGGGCTGTT
GCCTATCCCTGCGCGAACGGAAGGCAACTACCGTAGCTATGGGAATCCTCACGTTGAGCGCCTTCGCTTCATCCGCAACT
GCCGCGCCCTGGGTATGACGCATCAGGAAATTCACACGCTATTGGGCCTGATGGACCAGCCAGCCAGCGATTGCGGGGCC
GTCAACGAACTGCTGGACGAACACATTACCCACGTCGACGTGCGGATTACCGAGTTGACCCAACTCAAGCACCAACTCAG
CGAACTGCGTCAATCCTGCCAAATCAAGCAGGACGTAAGTACGTGCGGCATCTTGCAAGGATTGGCATCCATGGAGACTG
AGGCAAGGCGCGATAGACACACGCACCTTGGTTGA

Upstream 100 bases:

>100_bases
AATTTCTTCTGGGCGAACGGACATGTTGCGATCTCGATTAGTTGGATATTGCTCATTTCATACCCTGTAGCTACTATAGG
GTCAAGATTTTTGGAGATGA

Downstream 100 bases:

>100_bases
TCCGGCTCACTGTACGATTAGTTCACGACACCCCTTGAAAGCCATCCTCCTACTGGGTAGTGCCCGAACCAATGGTCAGA
CAGGAAAAAATTGACGCAAT

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MMKIGELAQASQCTVETVRYYEKEGLLPIPARTEGNYRSYGNPHVERLRFIRNCRALGMTHQEIHTLLGLMDQPASDCGA
VNELLDEHITHVDVRITELTQLKHQLSELRQSCQIKQDVSTCGILQGLASMETEARRDRHTHLG

Sequences:

>Translated_144_residues
MMKIGELAQASQCTVETVRYYEKEGLLPIPARTEGNYRSYGNPHVERLRFIRNCRALGMTHQEIHTLLGLMDQPASDCGA
VNELLDEHITHVDVRITELTQLKHQLSELRQSCQIKQDVSTCGILQGLASMETEARRDRHTHLG
>Mature_144_residues
MMKIGELAQASQCTVETVRYYEKEGLLPIPARTEGNYRSYGNPHVERLRFIRNCRALGMTHQEIHTLLGLMDQPASDCGA
VNELLDEHITHVDVRITELTQLKHQLSELRQSCQIKQDVSTCGILQGLASMETEARRDRHTHLG

Specific function: Transcriptional regulator [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789687, Length=130, Percent_Identity=35.3846153846154, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI1786695, Length=128, Percent_Identity=28.90625, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 16353; Mature: 16353

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKIGELAQASQCTVETVRYYEKEGLLPIPARTEGNYRSYGNPHVERLRFIRNCRALGMT
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
HQEIHTLLGLMDQPASDCGAVNELLDEHITHVDVRITELTQLKHQLSELRQSCQIKQDVS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TCGILQGLASMETEARRDRHTHLG
HHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMKIGELAQASQCTVETVRYYEKEGLLPIPARTEGNYRSYGNPHVERLRFIRNCRALGMT
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
HQEIHTLLGLMDQPASDCGAVNELLDEHITHVDVRITELTQLKHQLSELRQSCQIKQDVS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TCGILQGLASMETEARRDRHTHLG
HHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]