Definition Dechloromonas aromatica RCB, complete genome.
Accession NC_007298
Length 4,501,104

Click here to switch to the map view.

The map label for this gene is yqjD [C]

Identifier: 71907678

GI number: 71907678

Start: 2211359

End: 2211709

Strand: Reverse

Name: yqjD [C]

Synonym: Daro_2050

Alternate gene names: 71907678

Gene position: 2211709-2211359 (Counterclockwise)

Preceding gene: 71907683

Following gene: 71907677

Centisome position: 49.14

GC content: 58.97

Gene sequence:

>351_bases
ATGTCAGAGGAATGGAATGGCCATCCAGTCGGATGGTCCGTCCTTCCCTACAACCACGCATTGCAGACACCAGGAGAAAT
CATGAGTACAGAAATCACTACCACCCCGGGATCGACCGAAAACCCGAAGGAAAGCCTGTTCAAAGGGATGGTCGGCAAGG
CCGACCATCTGCTCAAGGACGCCAGCCATTCCGTGGCCGAAGAGTTCTCCGCAACGCGCCATGCGGTGTCGGAAAAGGCT
TGTGGCGCCGCCAATTTAACCCACGAATACGTGCGGGCGAATCCCTGGAAAGTCGCCGGCATCGCCGCGGCCGCCGGTGT
CTTCATCGGCGCCTTGATCATCCGCCGCTGA

Upstream 100 bases:

>100_bases
GGGCATTAACGATTAATGCGGTGCCTCTCATCTTACGGAGGCGATCACCGTGGTCTGTTCGCCAGCGCACAGACCCGGCA
TTTGCCAGCACTGAAGATGC

Downstream 100 bases:

>100_bases
TCCACGCATACCCCCATCAATTCAGGAGGCATCAATGTCTAGTGTCGGTTATCACGAACCCGTCGACGAACTACCCGCCG
AAATCCGCGACATGCACCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MSEEWNGHPVGWSVLPYNHALQTPGEIMSTEITTTPGSTENPKESLFKGMVGKADHLLKDASHSVAEEFSATRHAVSEKA
CGAANLTHEYVRANPWKVAGIAAAAGVFIGALIIRR

Sequences:

>Translated_116_residues
MSEEWNGHPVGWSVLPYNHALQTPGEIMSTEITTTPGSTENPKESLFKGMVGKADHLLKDASHSVAEEFSATRHAVSEKA
CGAANLTHEYVRANPWKVAGIAAAAGVFIGALIIRR
>Mature_115_residues
SEEWNGHPVGWSVLPYNHALQTPGEIMSTEITTTPGSTENPKESLFKGMVGKADHLLKDASHSVAEEFSATRHAVSEKAC
GAANLTHEYVRANPWKVAGIAAAAGVFIGALIIRR

Specific function: Unknown

COG id: COG4575

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12425; Mature: 12294

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEWNGHPVGWSVLPYNHALQTPGEIMSTEITTTPGSTENPKESLFKGMVGKADHLLKD
CCCCCCCCCCCEEECCCCCCCCCCCHHHCCEEEECCCCCCCHHHHHHHHHCCHHHHHHHH
ASHSVAEEFSATRHAVSEKACGAANLTHEYVRANPWKVAGIAAAAGVFIGALIIRR
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SEEWNGHPVGWSVLPYNHALQTPGEIMSTEITTTPGSTENPKESLFKGMVGKADHLLKD
CCCCCCCCCCEEECCCCCCCCCCCHHHCCEEEECCCCCCCHHHHHHHHHCCHHHHHHHH
ASHSVAEEFSATRHAVSEKACGAANLTHEYVRANPWKVAGIAAAAGVFIGALIIRR
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA