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The map label for this gene is ymdB [C]

Identifier: 71907557

GI number: 71907557

Start: 2074517

End: 2075077

Strand: Reverse

Name: ymdB [C]

Synonym: Daro_1928

Alternate gene names: 71907557

Gene position: 2075077-2074517 (Counterclockwise)

Preceding gene: 71907559

Following gene: 71907556

Centisome position: 46.1

GC content: 57.22

Gene sequence:

>561_bases
ATGATGAAAACCACTCCACCAAGCTATATGAACGGGCGAGTCCGCCTCTATGTCGGCGACCTGACCGATCAAGCGGTCGA
CGCTATCGTCAATGCAGCCAACAGAACCCTGCTCGGCGGCGGCGGGGTTGATGGTGCGATTCATCGACGTGGCGGCCCAG
CCATTCTCGACGCCTGCCGCGAACTTCGCCGCAGCCAGTGGCCAGATGGTTTGCCTACAGGTCAGGTCGCGCTTACCAAC
GGTGGAAAACTCCCGGCGCCTTACGTCATCCACACCGTCGGACCCATCTATGGACAACACAGGGGAAAAGAAGCTGAACT
GCTTGCTGCCTGCTATCGCAACGCCATTGAGCTGGCGGCACACCTTGAACTGAAAAGCCTCGCCTTTCCTTCAATCTCAA
CCGGCGCCTTTGGCTACCCACCCGACAAGGCTGCGCTGATCGTTTCGCGTTCAATGCACAAGGTTCTCGATGAAATCGCT
GCCATCGATGAAATCCGGCTGGTGTTTTTCAACGCGTCGCAGATGGAAACCTTCATCGCTCACCAGAATTTTCCGCGCTG
A

Upstream 100 bases:

>100_bases
AATCCACCGACGGTTAGGGCATGCATCTTCTGTTTGCTGGCCGCCCAATATCGACCACCACAAAATCCCCCTCTATCATG
GTGTGTAAAGAGGCAAGAGA

Downstream 100 bases:

>100_bases
TCTCGCTTCTGCCCCCTTGCCCATAACTGGCCCTGCGGCATAATTCAGCTTTCGGCCAGAAGCGGTATCCAAGCCGCCAG
CCATCAATCATCTGGAGAAC

Product: Appr-1-p processing

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MMKTTPPSYMNGRVRLYVGDLTDQAVDAIVNAANRTLLGGGGVDGAIHRRGGPAILDACRELRRSQWPDGLPTGQVALTN
GGKLPAPYVIHTVGPIYGQHRGKEAELLAACYRNAIELAAHLELKSLAFPSISTGAFGYPPDKAALIVSRSMHKVLDEIA
AIDEIRLVFFNASQMETFIAHQNFPR

Sequences:

>Translated_186_residues
MMKTTPPSYMNGRVRLYVGDLTDQAVDAIVNAANRTLLGGGGVDGAIHRRGGPAILDACRELRRSQWPDGLPTGQVALTN
GGKLPAPYVIHTVGPIYGQHRGKEAELLAACYRNAIELAAHLELKSLAFPSISTGAFGYPPDKAALIVSRSMHKVLDEIA
AIDEIRLVFFNASQMETFIAHQNFPR
>Mature_186_residues
MMKTTPPSYMNGRVRLYVGDLTDQAVDAIVNAANRTLLGGGGVDGAIHRRGGPAILDACRELRRSQWPDGLPTGQVALTN
GGKLPAPYVIHTVGPIYGQHRGKEAELLAACYRNAIELAAHLELKSLAFPSISTGAFGYPPDKAALIVSRSMHKVLDEIA
AIDEIRLVFFNASQMETFIAHQNFPR

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI13569840, Length=163, Percent_Identity=46.0122699386503, Blast_Score=139, Evalue=1e-33,
Organism=Homo sapiens, GI117968621, Length=145, Percent_Identity=49.6551724137931, Blast_Score=136, Evalue=1e-32,
Organism=Homo sapiens, GI207450721, Length=168, Percent_Identity=33.9285714285714, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI8923143, Length=168, Percent_Identity=33.9285714285714, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI20336746, Length=178, Percent_Identity=28.6516853932584, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI93141018, Length=181, Percent_Identity=27.0718232044199, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI93141020, Length=181, Percent_Identity=27.0718232044199, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI4758496, Length=181, Percent_Identity=27.0718232044199, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI154813199, Length=126, Percent_Identity=34.9206349206349, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI226371718, Length=182, Percent_Identity=29.6703296703297, Blast_Score=70, Evalue=9e-13,
Organism=Homo sapiens, GI226371716, Length=182, Percent_Identity=29.6703296703297, Blast_Score=70, Evalue=9e-13,
Organism=Homo sapiens, GI226371714, Length=182, Percent_Identity=29.6703296703297, Blast_Score=70, Evalue=9e-13,
Organism=Homo sapiens, GI226371712, Length=182, Percent_Identity=29.6703296703297, Blast_Score=70, Evalue=9e-13,
Organism=Homo sapiens, GI226371710, Length=182, Percent_Identity=29.6703296703297, Blast_Score=70, Evalue=9e-13,
Organism=Homo sapiens, GI226371706, Length=182, Percent_Identity=29.6703296703297, Blast_Score=70, Evalue=9e-13,
Organism=Escherichia coli, GI1787283, Length=176, Percent_Identity=43.1818181818182, Blast_Score=138, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17538214, Length=161, Percent_Identity=42.8571428571429, Blast_Score=121, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24586353, Length=184, Percent_Identity=31.5217391304348, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 20106; Mature: 20106

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKTTPPSYMNGRVRLYVGDLTDQAVDAIVNAANRTLLGGGGVDGAIHRRGGPAILDACR
CCCCCCCHHHCCEEEEEECCCCHHHHHHHHHHHCCEEECCCCCCCCEECCCCHHHHHHHH
ELRRSQWPDGLPTGQVALTNGGKLPAPYVIHTVGPIYGQHRGKEAELLAACYRNAIELAA
HHHHHCCCCCCCCCCEEEECCCCCCCCEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHH
HLELKSLAFPSISTGAFGYPPDKAALIVSRSMHKVLDEIAAIDEIRLVFFNASQMETFIA
HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHH
HQNFPR
HCCCCC
>Mature Secondary Structure
MMKTTPPSYMNGRVRLYVGDLTDQAVDAIVNAANRTLLGGGGVDGAIHRRGGPAILDACR
CCCCCCCHHHCCEEEEEECCCCHHHHHHHHHHHCCEEECCCCCCCCEECCCCHHHHHHHH
ELRRSQWPDGLPTGQVALTNGGKLPAPYVIHTVGPIYGQHRGKEAELLAACYRNAIELAA
HHHHHCCCCCCCCCCEEEECCCCCCCCEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHH
HLELKSLAFPSISTGAFGYPPDKAALIVSRSMHKVLDEIAAIDEIRLVFFNASQMETFIA
HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHH
HQNFPR
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10858335 [H]