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The map label for this gene is yqhC [H]

Identifier: 71907519

GI number: 71907519

Start: 2030224

End: 2031156

Strand: Reverse

Name: yqhC [H]

Synonym: Daro_1890

Alternate gene names: 71907519

Gene position: 2031156-2030224 (Counterclockwise)

Preceding gene: 71907525

Following gene: 71907518

Centisome position: 45.13

GC content: 61.41

Gene sequence:

>933_bases
ATGCTCCGCCAAAATAATTCCACCGCCATGAATGACGACGAACTGGCTCGCCAGCGCGATGAACTCGCCGCCATCATCAG
CCGCCACTGCCAATCTGATGGCGCCTTCGACACAGCCATTCCCGGCGTCAAGCTTTTCCGCGGATCGAATACCGAAGTGC
CGACCTGCGCCATCATGACCTCCGTCTTCGCGATGATGGCCCAGGGCGCCAAACGCATTACGGTCGCTGACGATACCTAC
GATTACGACCCCCGCCATTACCTGATTTCCTCGGTTGACCTGCCGATGTTCTCGCGCATCACCCGAGCCTCATCCGCCGA
GCCTTACCTTGGCCTGGCGCTCAGCATCGACCCGCTGAAAATCAACGAACTGGCGGCAGCCATGCCGCAAAACCGGGTTC
AGGATGCGGTCGATCGCGGCATTGCCGTCGGCCTGCTCAGCGTCGACATTCAGAACACCGCATTACGTCTGGTCCGATTG
CTTGATACTCCAGCCGACATCCCGGTACTGGCCCCGATCATCGAACGCGAACTGCTCTACCGCCTGCTCGCCGGCCCCCT
CGGTTCGCGCCTGCGTCAGGCGGCGGCTAGCGGCAGCCACAGCCACCAGATTGTCCGCGCCATTGGCTGGCTGAAAACCA
ACCTTGACCAGCCGCTCAGCATCGAACGGCTGGCCAGTCTGGCAAACATGAGCCGTTCGTCGCTGCACCATCATTTCAAG
GCCCTGACGGCGATGACGCCGCTGCAATACCAGAAGCAATTACGCCTGCAGGAAGCCCGCCGCCTGATGCTGGTCAGCGA
TACCGATGCCGCCTCGGCGGCGCATCACGTCGGCTATGAAAGCCCCTCGCAATTCAATCGCGAATATCGACGCATGTTCG
GCACCCCGCCGGGCCGCGATGTCGCCCAGTTTCGACTGAGCCAGTCTGTCTGA

Upstream 100 bases:

>100_bases
GTGCAAACTTATTGCCTGATCCTCCAGAGTCTGTTCTTGGCCTCTCGCCGGACAAGGCCAAAACAGCTACTCTCCAGTCA
TGGATACTGAGGTTCTGACC

Downstream 100 bases:

>100_bases
CCCCGTACCCGCTGCGCCGGGAATCATTTGCCGTTATGCCGGTCAGACCCGGCAACCTCAAGGAAACAATCATGCCAAAA
ATCGAAAAGACCGACGCCGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MLRQNNSTAMNDDELARQRDELAAIISRHCQSDGAFDTAIPGVKLFRGSNTEVPTCAIMTSVFAMMAQGAKRITVADDTY
DYDPRHYLISSVDLPMFSRITRASSAEPYLGLALSIDPLKINELAAAMPQNRVQDAVDRGIAVGLLSVDIQNTALRLVRL
LDTPADIPVLAPIIERELLYRLLAGPLGSRLRQAAASGSHSHQIVRAIGWLKTNLDQPLSIERLASLANMSRSSLHHHFK
ALTAMTPLQYQKQLRLQEARRLMLVSDTDAASAAHHVGYESPSQFNREYRRMFGTPPGRDVAQFRLSQSV

Sequences:

>Translated_310_residues
MLRQNNSTAMNDDELARQRDELAAIISRHCQSDGAFDTAIPGVKLFRGSNTEVPTCAIMTSVFAMMAQGAKRITVADDTY
DYDPRHYLISSVDLPMFSRITRASSAEPYLGLALSIDPLKINELAAAMPQNRVQDAVDRGIAVGLLSVDIQNTALRLVRL
LDTPADIPVLAPIIERELLYRLLAGPLGSRLRQAAASGSHSHQIVRAIGWLKTNLDQPLSIERLASLANMSRSSLHHHFK
ALTAMTPLQYQKQLRLQEARRLMLVSDTDAASAAHHVGYESPSQFNREYRRMFGTPPGRDVAQFRLSQSV
>Mature_310_residues
MLRQNNSTAMNDDELARQRDELAAIISRHCQSDGAFDTAIPGVKLFRGSNTEVPTCAIMTSVFAMMAQGAKRITVADDTY
DYDPRHYLISSVDLPMFSRITRASSAEPYLGLALSIDPLKINELAAAMPQNRVQDAVDRGIAVGLLSVDIQNTALRLVRL
LDTPADIPVLAPIIERELLYRLLAGPLGSRLRQAAASGSHSHQIVRAIGWLKTNLDQPLSIERLASLANMSRSSLHHHFK
ALTAMTPLQYQKQLRLQEARRLMLVSDTDAASAAHHVGYESPSQFNREYRRMFGTPPGRDVAQFRLSQSV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=302, Percent_Identity=33.7748344370861, Blast_Score=161, Evalue=5e-41,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34302; Mature: 34302

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRQNNSTAMNDDELARQRDELAAIISRHCQSDGAFDTAIPGVKLFRGSNTEVPTCAIMT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEEECCCCCCCCHHHHHH
SVFAMMAQGAKRITVADDTYDYDPRHYLISSVDLPMFSRITRASSAEPYLGLALSIDPLK
HHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEEECCCH
INELAAAMPQNRVQDAVDRGIAVGLLSVDIQNTALRLVRLLDTPADIPVLAPIIERELLY
HHHHHHHCCHHHHHHHHHCCCEEEHEEECHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RLLAGPLGSRLRQAAASGSHSHQIVRAIGWLKTNLDQPLSIERLASLANMSRSSLHHHFK
HHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
ALTAMTPLQYQKQLRLQEARRLMLVSDTDAASAAHHVGYESPSQFNREYRRMFGTPPGRD
HHHHHCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCH
VAQFRLSQSV
HHHHHHHCCC
>Mature Secondary Structure
MLRQNNSTAMNDDELARQRDELAAIISRHCQSDGAFDTAIPGVKLFRGSNTEVPTCAIMT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEEECCCCCCCCHHHHHH
SVFAMMAQGAKRITVADDTYDYDPRHYLISSVDLPMFSRITRASSAEPYLGLALSIDPLK
HHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEEECCCH
INELAAAMPQNRVQDAVDRGIAVGLLSVDIQNTALRLVRLLDTPADIPVLAPIIERELLY
HHHHHHHCCHHHHHHHHHCCCEEEHEEECHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RLLAGPLGSRLRQAAASGSHSHQIVRAIGWLKTNLDQPLSIERLASLANMSRSSLHHHFK
HHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
ALTAMTPLQYQKQLRLQEARRLMLVSDTDAASAAHHVGYESPSQFNREYRRMFGTPPGRD
HHHHHCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCH
VAQFRLSQSV
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]