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The map label for this gene is ylbK [H]

Identifier: 71907493

GI number: 71907493

Start: 2003507

End: 2004388

Strand: Reverse

Name: ylbK [H]

Synonym: Daro_1864

Alternate gene names: 71907493

Gene position: 2004388-2003507 (Counterclockwise)

Preceding gene: 71907494

Following gene: 71907492

Centisome position: 44.53

GC content: 64.74

Gene sequence:

>882_bases
ATGCCCGATCAAACCACGCCTCTCCAATTAATCAATCGCCGACGCTTGCTGGGCGCCAGCCTGCTGCTGCTCGGCGGCTG
CGCCAGTTTCCAGTCGGCCAAACCCGTTGCGCCGGCGCGGCCCAAGGTCGGCCTCGCCCTGGGTGGTGGCGCGGCACGCG
GTTTCGCCCATATCGGCGTGATCAAGATGCTCGAATCGCACGGCATCTATCCCGACTACGTGGTCGGCACCAGTGCCGGG
GCCGTCGTCGGCTCGCTCTACGCGGCCGGCTACGACGCCTTTGCCATGCAGAAAATTGCCCAGCAACTCGACGAAAAGAT
CTTCGCCGACTGGACGCTGGGCGGGCGCGGCCTGCTCAAGGGAGAAGCCCTGCAGGAGTTCATCAATCAGCACCTGAACA
AACGGCCGCTGGAAAAGCTGAACCGGCCCTTCGCCACCGTCGCCACCGATCTCAACAGCGGCGAGCGCGTCGTCTTCCGG
ACTGGCGACAGCGGCATGGCCGTACGTGCTTCTGCCTCTGTACCCGGGGTTTTCCAGCCCACGCAGTTTCGTGGCAGGAG
CTACGTCGACGGGGGGCTGACCAGTCCGATTCCGGTGCAGGCAGCGCGCGAAATGGGCGCCGACATCGTGATTGCGGTCG
ATATATCCTCCAGACCGGAAGGCCAGCCGGTCGATAGCATGACCGCAATCATCTGGCAGACGACGACCATCATGGGTGGC
GCAATCGGCGCCAATGAGCTGCGCGGCGCCGACATCGTCATCCGCCCGAAGCTGCCCTATGTCAAGTCCTGGGACTTCAC
GGCCCGCAACGACGCCATGCTCGAAGGCGAGCGGGCCGCACAGGCGGCCCTGCCCGCGATCAAGCAGAAACTTGGGCGTT
GA

Upstream 100 bases:

>100_bases
GGCTTCCTACACCACCGTTAATGACAAGGTCACGTCGACTGGCGCCTTTGGCATGGTGTTCGTGCTTGATTGACCCCTCC
GATTGCCTGCCACCAATAAC

Downstream 100 bases:

>100_bases
CCACCGGCAGTCCCCAAAGCGTCACGAATTTCTGCCAGAATTCCATTTTTGAACCAGTCCAGCGGATTCACCATGACCTA
TAAAGTCTTTGTCGACGGCC

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MPDQTTPLQLINRRRLLGASLLLLGGCASFQSAKPVAPARPKVGLALGGGAARGFAHIGVIKMLESHGIYPDYVVGTSAG
AVVGSLYAAGYDAFAMQKIAQQLDEKIFADWTLGGRGLLKGEALQEFINQHLNKRPLEKLNRPFATVATDLNSGERVVFR
TGDSGMAVRASASVPGVFQPTQFRGRSYVDGGLTSPIPVQAAREMGADIVIAVDISSRPEGQPVDSMTAIIWQTTTIMGG
AIGANELRGADIVIRPKLPYVKSWDFTARNDAMLEGERAAQAALPAIKQKLGR

Sequences:

>Translated_293_residues
MPDQTTPLQLINRRRLLGASLLLLGGCASFQSAKPVAPARPKVGLALGGGAARGFAHIGVIKMLESHGIYPDYVVGTSAG
AVVGSLYAAGYDAFAMQKIAQQLDEKIFADWTLGGRGLLKGEALQEFINQHLNKRPLEKLNRPFATVATDLNSGERVVFR
TGDSGMAVRASASVPGVFQPTQFRGRSYVDGGLTSPIPVQAAREMGADIVIAVDISSRPEGQPVDSMTAIIWQTTTIMGG
AIGANELRGADIVIRPKLPYVKSWDFTARNDAMLEGERAAQAALPAIKQKLGR
>Mature_292_residues
PDQTTPLQLINRRRLLGASLLLLGGCASFQSAKPVAPARPKVGLALGGGAARGFAHIGVIKMLESHGIYPDYVVGTSAGA
VVGSLYAAGYDAFAMQKIAQQLDEKIFADWTLGGRGLLKGEALQEFINQHLNKRPLEKLNRPFATVATDLNSGERVVFRT
GDSGMAVRASASVPGVFQPTQFRGRSYVDGGLTSPIPVQAAREMGADIVIAVDISSRPEGQPVDSMTAIIWQTTTIMGGA
IGANELRGADIVIRPKLPYVKSWDFTARNDAMLEGERAAQAALPAIKQKLGR

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=186, Percent_Identity=33.8709677419355, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI116256487, Length=186, Percent_Identity=33.8709677419355, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI260656039, Length=186, Percent_Identity=33.8709677419355, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI260656037, Length=186, Percent_Identity=33.8709677419355, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI260656043, Length=186, Percent_Identity=33.8709677419355, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI148727290, Length=243, Percent_Identity=31.2757201646091, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI148727335, Length=243, Percent_Identity=31.2757201646091, Blast_Score=93, Evalue=3e-19,
Organism=Escherichia coli, GI226510936, Length=303, Percent_Identity=31.023102310231, Blast_Score=132, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI71997289, Length=174, Percent_Identity=28.735632183908, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71997299, Length=174, Percent_Identity=28.735632183908, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193204778, Length=153, Percent_Identity=30.0653594771242, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323581, Length=189, Percent_Identity=29.6296296296296, Blast_Score=91, Evalue=3e-19,
Organism=Drosophila melanogaster, GI281376913, Length=186, Percent_Identity=30.6451612903226, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28571388, Length=186, Percent_Identity=29.0322580645161, Blast_Score=68, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 31124; Mature: 30993

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDQTTPLQLINRRRLLGASLLLLGGCASFQSAKPVAPARPKVGLALGGGAARGFAHIGV
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHH
IKMLESHGIYPDYVVGTSAGAVVGSLYAAGYDAFAMQKIAQQLDEKIFADWTLGGRGLLK
HHHHHHCCCCCCEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GEALQEFINQHLNKRPLEKLNRPFATVATDLNSGERVVFRTGDSGMAVRASASVPGVFQP
HHHHHHHHHHHCCCCCHHHHCCCCEEEHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCC
TQFRGRSYVDGGLTSPIPVQAAREMGADIVIAVDISSRPEGQPVDSMTAIIWQTTTIMGG
CCCCCCEECCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
AIGANELRGADIVIRPKLPYVKSWDFTARNDAMLEGERAAQAALPAIKQKLGR
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PDQTTPLQLINRRRLLGASLLLLGGCASFQSAKPVAPARPKVGLALGGGAARGFAHIGV
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHH
IKMLESHGIYPDYVVGTSAGAVVGSLYAAGYDAFAMQKIAQQLDEKIFADWTLGGRGLLK
HHHHHHCCCCCCEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GEALQEFINQHLNKRPLEKLNRPFATVATDLNSGERVVFRTGDSGMAVRASASVPGVFQP
HHHHHHHHHHHCCCCCHHHHCCCCEEEHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCC
TQFRGRSYVDGGLTSPIPVQAAREMGADIVIAVDISSRPEGQPVDSMTAIIWQTTTIMGG
CCCCCCEECCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
AIGANELRGADIVIRPKLPYVKSWDFTARNDAMLEGERAAQAALPAIKQKLGR
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]