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The map label for this gene is scoP [H]

Identifier: 71907473

GI number: 71907473

Start: 1982489

End: 1983046

Strand: Reverse

Name: scoP [H]

Synonym: Daro_1844

Alternate gene names: 71907473

Gene position: 1983046-1982489 (Counterclockwise)

Preceding gene: 71907474

Following gene: 71907472

Centisome position: 44.06

GC content: 59.32

Gene sequence:

>558_bases
ATGAAAAAACTTGCCTTGATTGCCGTCGCCCTTGCGATGGCGTTGTTGCTCGGTTGCCAGCAGGCGCGCGATCCAAAATT
GCCGGCCGGGGCCGATTTCGTGCTGCAAGCCGCCGACGGCCCGGTCGATTCCAAAGCCCTGCGCGGCAAGGTGCTATTGG
TCTATTTCGGCTATACCAATTGCCCGGACATCTGCCCGGCCTCGCTTGCTGCTGGCGGACAGGCATTGAAGGCGCTGAGC
AGTGAAGAGCGCAGTCGGGTCAAGCTGATCATGATCTCGGTCGACCCCGAGCGCGACACCATCAAGCACCTGAAGGAATA
CACCGCCTTCTTTCATCCCGAAATGATCGGTGTTACCGGCTCTATCGAGGAGATTGCCGCACTGACCAAGGCATACGGCG
CCGGTTACATGAAGCAGGCGAAGCGCACCGACGGCAGCTACGCCGTCGATCACACCACTTCGACCTATGTGGTCGGGCCG
GATGGCAAACTGAGCAGCGTTCTTGAACTCGGCGCCTCGACCGACAAGGTGGTTGCTGCGGTCAGAAAACTGCTTTGA

Upstream 100 bases:

>100_bases
CGGTGCCCTGATGCGGGCTTCAAACCGTTTTTGATCTGATCGCTGGCAAAGCGGCATCGTCACAGGCAGACTTTGCGTCT
GCCTTTTGTTTTTCCGGACC

Downstream 100 bases:

>100_bases
TGCGACCGTCTAGCCTTGCCTTAGGTATGCTGGCCGTTCTGGTCACCGCATGTTTATTAATTTTTGGACTTGTTTCCCGG
TTGAGCGTGGAAGACGAACA

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MKKLALIAVALAMALLLGCQQARDPKLPAGADFVLQAADGPVDSKALRGKVLLVYFGYTNCPDICPASLAAGGQALKALS
SEERSRVKLIMISVDPERDTIKHLKEYTAFFHPEMIGVTGSIEEIAALTKAYGAGYMKQAKRTDGSYAVDHTTSTYVVGP
DGKLSSVLELGASTDKVVAAVRKLL

Sequences:

>Translated_185_residues
MKKLALIAVALAMALLLGCQQARDPKLPAGADFVLQAADGPVDSKALRGKVLLVYFGYTNCPDICPASLAAGGQALKALS
SEERSRVKLIMISVDPERDTIKHLKEYTAFFHPEMIGVTGSIEEIAALTKAYGAGYMKQAKRTDGSYAVDHTTSTYVVGP
DGKLSSVLELGASTDKVVAAVRKLL
>Mature_185_residues
MKKLALIAVALAMALLLGCQQARDPKLPAGADFVLQAADGPVDSKALRGKVLLVYFGYTNCPDICPASLAAGGQALKALS
SEERSRVKLIMISVDPERDTIKHLKEYTAFFHPEMIGVTGSIEEIAALTKAYGAGYMKQAKRTDGSYAVDHTTSTYVVGP
DGKLSSVLELGASTDKVVAAVRKLL

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=170, Percent_Identity=35.2941176470588, Blast_Score=110, Evalue=5e-25,
Organism=Homo sapiens, GI281182722, Length=170, Percent_Identity=35.2941176470588, Blast_Score=110, Evalue=5e-25,
Organism=Homo sapiens, GI281182716, Length=170, Percent_Identity=35.2941176470588, Blast_Score=110, Evalue=5e-25,
Organism=Homo sapiens, GI153791313, Length=170, Percent_Identity=35.2941176470588, Blast_Score=110, Evalue=5e-25,
Organism=Homo sapiens, GI4759068, Length=134, Percent_Identity=35.0746268656716, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17531419, Length=140, Percent_Identity=35.7142857142857, Blast_Score=101, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6319498, Length=149, Percent_Identity=32.8859060402685, Blast_Score=99, Evalue=5e-22,
Organism=Saccharomyces cerevisiae, GI6319511, Length=143, Percent_Identity=35.6643356643357, Blast_Score=96, Evalue=2e-21,
Organism=Drosophila melanogaster, GI19920710, Length=154, Percent_Identity=35.0649350649351, Blast_Score=103, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 19614; Mature: 19614

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLALIAVALAMALLLGCQQARDPKLPAGADFVLQAADGPVDSKALRGKVLLVYFGYTN
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCHHHCCCEEEEEECCCC
CPDICPASLAAGGQALKALSSEERSRVKLIMISVDPERDTIKHLKEYTAFFHPEMIGVTG
CCCCCCHHHHCCHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCHHCCCCC
SIEEIAALTKAYGAGYMKQAKRTDGSYAVDHTTSTYVVGPDGKLSSVLELGASTDKVVAA
CHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCCEEEECCCCHHHHHHHHCCCHHHHHHH
VRKLL
HHHHC
>Mature Secondary Structure
MKKLALIAVALAMALLLGCQQARDPKLPAGADFVLQAADGPVDSKALRGKVLLVYFGYTN
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCHHHCCCEEEEEECCCC
CPDICPASLAAGGQALKALSSEERSRVKLIMISVDPERDTIKHLKEYTAFFHPEMIGVTG
CCCCCCHHHHCCHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCHHCCCCC
SIEEIAALTKAYGAGYMKQAKRTDGSYAVDHTTSTYVVGPDGKLSSVLELGASTDKVVAA
CHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCCEEEECCCCHHHHHHHHCCCHHHHHHH
VRKLL
HHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226670 [H]