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The map label for this gene is cph2 [H]

Identifier: 71907229

GI number: 71907229

Start: 1711495

End: 1712436

Strand: Reverse

Name: cph2 [H]

Synonym: Daro_1597

Alternate gene names: 71907229

Gene position: 1712436-1711495 (Counterclockwise)

Preceding gene: 71907230

Following gene: 71907228

Centisome position: 38.04

GC content: 57.11

Gene sequence:

>942_bases
ATGAAAATTCTCGTTGTTGAAGACAGCCAGTCCAGTCTTGCCACACTGACCAAGTATGTCGAACACTTCGGTGCGACAAG
CATTCCGGCCGAAAATGGCGAAATGGCGATTGATCTGTTTTCACGCAACCGCCCCGATCTGGTTCTGCTCAACATCTTGC
TACCGGATATGGATGGATTTGTCGTTGCGCAGCATATCCGGGCCATGGAAAAACCGGGGGACTGGGCACCGATTATTTTT
CTTTCGTCACTCGACGACGATGCCAATATTGAAAAAGGCATTGCTGCCGGGGGCGACGATTACCTGCACAAGCCAATCAG
CGAGATCGTCCTCGGCGCAAAGATTCGCGCCATGCAGCGCATCGTTCTGATGCGCGCCTCGCTGCTCGCCGTGACGCGAA
AGCTTGATGCTGCCAATCAGGAATTGATCCGTATTTCGTCCACGGATAGCCTGACCGGTGTCGCCAACCGGCGCTATTTC
GACGAAGCAATGTCCATTGAATGGCGCCGGGCGCGCCGGCACTCGAACAGCATCGCCTTGTTGATGTGCGATATCGATTA
TTTCAAGCTGTACAACGACACCTATGGCCATCAGGCCGGTGATGAATGCCTGCGCAAGATTGCCGCCGCCATCAGTCGCC
ATACGGAGCGCCCATCCGACACGGTAGCCCGTTATGGCGGCGAGAAGTTTGCCGTGATCCTGCCGGAAACCAGTATTGGC
GGCGCGCTGATGGTGGCCGAGAAAATTCGCCAGGCCACCAAGGAACTGAACATCACTCACGCCTCGTCGCCAACAGGCCA
GGTTGGCTTGAGCATCGGCATTGCCTCGGCCGCCCCCGGCTTCGACAACCCGCCGGATGATTTGATCCTTGCGGCCGACA
AGGCGCTTTACCGGGCCAAGAAGGAAGGTCGGGATCGCGTCTACCGTGCCGACGCCACCTAG

Upstream 100 bases:

>100_bases
TCGGCTGGGGAATAACGGCCATTAGCATTGCAGTCGGCGCACTGCTTTTCTTCAGCAGCTATTGTCGTTAGACTGAGGCA
ATCGAGTTCGTGTCGCCGCC

Downstream 100 bases:

>100_bases
CAACTGACAATCCCATGGCCAGAAGACGCATCTCCATCATCATCGTTGACGACAATGACATGATGCGCGGCATTCTCCGG
GCAATGCTGCGGGGCGAGGA

Product: response regulator receiver modulated diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKILVVEDSQSSLATLTKYVEHFGATSIPAENGEMAIDLFSRNRPDLVLLNILLPDMDGFVVAQHIRAMEKPGDWAPIIF
LSSLDDDANIEKGIAAGGDDYLHKPISEIVLGAKIRAMQRIVLMRASLLAVTRKLDAANQELIRISSTDSLTGVANRRYF
DEAMSIEWRRARRHSNSIALLMCDIDYFKLYNDTYGHQAGDECLRKIAAAISRHTERPSDTVARYGGEKFAVILPETSIG
GALMVAEKIRQATKELNITHASSPTGQVGLSIGIASAAPGFDNPPDDLILAADKALYRAKKEGRDRVYRADAT

Sequences:

>Translated_313_residues
MKILVVEDSQSSLATLTKYVEHFGATSIPAENGEMAIDLFSRNRPDLVLLNILLPDMDGFVVAQHIRAMEKPGDWAPIIF
LSSLDDDANIEKGIAAGGDDYLHKPISEIVLGAKIRAMQRIVLMRASLLAVTRKLDAANQELIRISSTDSLTGVANRRYF
DEAMSIEWRRARRHSNSIALLMCDIDYFKLYNDTYGHQAGDECLRKIAAAISRHTERPSDTVARYGGEKFAVILPETSIG
GALMVAEKIRQATKELNITHASSPTGQVGLSIGIASAAPGFDNPPDDLILAADKALYRAKKEGRDRVYRADAT
>Mature_313_residues
MKILVVEDSQSSLATLTKYVEHFGATSIPAENGEMAIDLFSRNRPDLVLLNILLPDMDGFVVAQHIRAMEKPGDWAPIIF
LSSLDDDANIEKGIAAGGDDYLHKPISEIVLGAKIRAMQRIVLMRASLLAVTRKLDAANQELIRISSTDSLTGVANRRYF
DEAMSIEWRRARRHSNSIALLMCDIDYFKLYNDTYGHQAGDECLRKIAAAISRHTERPSDTVARYGGEKFAVILPETSIG
GALMVAEKIRQATKELNITHASSPTGQVGLSIGIASAAPGFDNPPDDLILAADKALYRAKKEGRDRVYRADAT

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=40.3726708074534, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=35.2272727272727, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87082007, Length=164, Percent_Identity=37.8048780487805, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1787816, Length=256, Percent_Identity=31.25, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787802, Length=164, Percent_Identity=36.5853658536585, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=33.5294117647059, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87081881, Length=239, Percent_Identity=31.7991631799163, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788381, Length=162, Percent_Identity=32.7160493827161, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788085, Length=166, Percent_Identity=31.9277108433735, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87081977, Length=175, Percent_Identity=31.4285714285714, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87081974, Length=179, Percent_Identity=27.3743016759777, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787487, Length=108, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787056, Length=161, Percent_Identity=32.2981366459627, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787541, Length=175, Percent_Identity=33.1428571428571, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788956, Length=185, Percent_Identity=29.1891891891892, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786784, Length=120, Percent_Identity=34.1666666666667, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786599, Length=130, Percent_Identity=30.7692307692308, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87082012, Length=120, Percent_Identity=31.6666666666667, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789809, Length=119, Percent_Identity=31.9327731092437, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 34356; Mature: 34356

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILVVEDSQSSLATLTKYVEHFGATSIPAENGEMAIDLFSRNRPDLVLLNILLPDMDGF
CEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCHH
VVAQHIRAMEKPGDWAPIIFLSSLDDDANIEKGIAAGGDDYLHKPISEIVLGAKIRAMQR
HHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IVLMRASLLAVTRKLDAANQELIRISSTDSLTGVANRRYFDEAMSIEWRRARRHSNSIAL
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
LMCDIDYFKLYNDTYGHQAGDECLRKIAAAISRHTERPSDTVARYGGEKFAVILPETSIG
EEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCCCCC
GALMVAEKIRQATKELNITHASSPTGQVGLSIGIASAAPGFDNPPDDLILAADKALYRAK
CHHHHHHHHHHHHHHCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEHHHHHHHHH
KEGRDRVYRADAT
HCCCCCEEECCCC
>Mature Secondary Structure
MKILVVEDSQSSLATLTKYVEHFGATSIPAENGEMAIDLFSRNRPDLVLLNILLPDMDGF
CEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCHH
VVAQHIRAMEKPGDWAPIIFLSSLDDDANIEKGIAAGGDDYLHKPISEIVLGAKIRAMQR
HHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IVLMRASLLAVTRKLDAANQELIRISSTDSLTGVANRRYFDEAMSIEWRRARRHSNSIAL
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
LMCDIDYFKLYNDTYGHQAGDECLRKIAAAISRHTERPSDTVARYGGEKFAVILPETSIG
EEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCCCCC
GALMVAEKIRQATKELNITHASSPTGQVGLSIGIASAAPGFDNPPDDLILAADKALYRAK
CHHHHHHHHHHHHHHCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEHHHHHHHHH
KEGRDRVYRADAT
HCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]