BacMap

Definition	Dechloromonas aromatica RCB, complete genome.
Accession	NC_007298
Length	4,501,104

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The map label for this gene is livG [H]

Identifier: 71907067

GI number: 71907067

Start: 1560341

End: 1561177

Strand: Reverse

Name: livG [H]

Synonym: Daro_1435

Alternate gene names: 71907067

Gene position: 1561177-1560341 (Counterclockwise)

Preceding gene: 71907068

Following gene: 71907066

Centisome position: 34.68

GC content: 60.93

Gene sequence:

>837_bases
ATGCTGAATACCGTCAATATTTTTGAGGACGACCGCCCGGAAGGCAGCGACGGCGCCGACCAGATGGGCCACTTCGTCAC
CGGCGAACTCGATCTGTCGCACGGCGTCGCGCTCTATCTCGAAGACATCACCGTCAGCTTCGACGGCTTCAAGGCGCTCA
ACAACCTCAATCTCGAAATCAACGCTGGCGAGCTGCGCTGCATCATCGGTCCCAACGGTGCCGGCAAGACGACCATGATG
GACGTCATCACCGGCAAGACGCGACCCGATTCGGGCAAGGCCTACTTCGGCCAGTCCATCGACCTGACCCGCCTGACCGA
ACCGGAAATCGCCCACGTCGGCATCGGCCGCAAGTTCCAGAAACCGACCATCTTCGAGCAGCACACGGTCTTCGAAAACC
TCGAGCTGGCCATGAAGACCGACAAGCGCGTCTGGAAAAGTCTGATGGCCTGGCTGGCCGGCGACGAGCGCGACAAGATC
GCCGAAACCCTGCGCCTGATCCGCCTCGACGGCGAAGCCGACCGCCAGGCCGGGCTACTTTCGCACGGCCAGAAACAATG
GCTGGAGATCGGCATGCTGCTCATGCAGGAACCCAAGCTGCTGCTGCTCGACGAGCCGGTCGCCGGCATGACCGACGACG
AAACGATGCGCACGGCCGAACTGTTCGTCTCGCTGGCTGGCAAGCATTCACTGGTTGTCGTCGAACACGACATGGCCTTC
GTCGAGAAACTCGGCGGTCTGGTCACCGTGCTGCACGAAGGCTCGGTGCTGGCCGAAGGCAATCTCGCCACCGTACAGAA
TGACCATCGCGTCATTGAAGTTTATCTGGGACGTTAA

Upstream 100 bases:

>100_bases
TGTTCTTCCTCGGCCTCCTGTTCATCGTCGTCACGCTGATGCTGCCGCAAGGCCTGGTCGGCCTGTGGAAGAAACTGATG
GCGAAGAAAGGAGACGCAGC

Downstream 100 bases:

>100_bases
GAAACCATGCTCACCATTGAAAACCTCAACCAGGCCTACGGCGGCAGCCACATCCTGCGTGGCCTCAGCTTCGAAGTGAA
GACAGGCGAAGTCACCACCC

Product: ABC transporter related

Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MLNTVNIFEDDRPEGSDGADQMGHFVTGELDLSHGVALYLEDITVSFDGFKALNNLNLEINAGELRCIIGPNGAGKTTMM
DVITGKTRPDSGKAYFGQSIDLTRLTEPEIAHVGIGRKFQKPTIFEQHTVFENLELAMKTDKRVWKSLMAWLAGDERDKI
AETLRLIRLDGEADRQAGLLSHGQKQWLEIGMLLMQEPKLLLLDEPVAGMTDDETMRTAELFVSLAGKHSLVVVEHDMAF
VEKLGGLVTVLHEGSVLAEGNLATVQNDHRVIEVYLGR

Sequences:

>Translated_278_residues
MLNTVNIFEDDRPEGSDGADQMGHFVTGELDLSHGVALYLEDITVSFDGFKALNNLNLEINAGELRCIIGPNGAGKTTMM
DVITGKTRPDSGKAYFGQSIDLTRLTEPEIAHVGIGRKFQKPTIFEQHTVFENLELAMKTDKRVWKSLMAWLAGDERDKI
AETLRLIRLDGEADRQAGLLSHGQKQWLEIGMLLMQEPKLLLLDEPVAGMTDDETMRTAELFVSLAGKHSLVVVEHDMAF
VEKLGGLVTVLHEGSVLAEGNLATVQNDHRVIEVYLGR
>Mature_278_residues
MLNTVNIFEDDRPEGSDGADQMGHFVTGELDLSHGVALYLEDITVSFDGFKALNNLNLEINAGELRCIIGPNGAGKTTMM
DVITGKTRPDSGKAYFGQSIDLTRLTEPEIAHVGIGRKFQKPTIFEQHTVFENLELAMKTDKRVWKSLMAWLAGDERDKI
AETLRLIRLDGEADRQAGLLSHGQKQWLEIGMLLMQEPKLLLLDEPVAGMTDDETMRTAELFVSLAGKHSLVVVEHDMAF
VEKLGGLVTVLHEGSVLAEGNLATVQNDHRVIEVYLGR

Specific function: Probable component of a branched-chain amino-acid transport system [H]

COG id: COG4674

COG function: function code R; Uncharacterized ABC-type transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI150417984, Length=251, Percent_Identity=30.6772908366534, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI116734710, Length=217, Percent_Identity=28.110599078341, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI27262624, Length=168, Percent_Identity=32.7380952380952, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI27262626, Length=168, Percent_Identity=32.7380952380952, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI27881501, Length=223, Percent_Identity=28.2511210762332, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI30795238, Length=223, Percent_Identity=28.2511210762332, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI47078218, Length=218, Percent_Identity=27.5229357798165, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI45446740, Length=218, Percent_Identity=27.5229357798165, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI31657092, Length=233, Percent_Identity=26.1802575107296, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI105990541, Length=255, Percent_Identity=27.843137254902, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI11967969, Length=194, Percent_Identity=26.2886597938144, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1789864, Length=249, Percent_Identity=33.7349397590361, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1788897, Length=243, Percent_Identity=29.2181069958848, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1790525, Length=235, Percent_Identity=28.936170212766, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1790190, Length=248, Percent_Identity=32.258064516129, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788761, Length=224, Percent_Identity=28.5714285714286, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786398, Length=238, Percent_Identity=29.8319327731092, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1790544, Length=242, Percent_Identity=24.7933884297521, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787370, Length=223, Percent_Identity=28.2511210762332, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1790467, Length=237, Percent_Identity=27.4261603375527, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788472, Length=247, Percent_Identity=29.1497975708502, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082268, Length=181, Percent_Identity=32.0441988950276, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87081791, Length=225, Percent_Identity=27.1111111111111, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI87081709, Length=224, Percent_Identity=25, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790739, Length=229, Percent_Identity=24.8908296943231, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789991, Length=246, Percent_Identity=28.0487804878049, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI87081782, Length=209, Percent_Identity=31.1004784688995, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1789593, Length=242, Percent_Identity=25.2066115702479, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787792, Length=232, Percent_Identity=25, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082267, Length=174, Percent_Identity=29.3103448275862, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787089, Length=235, Percent_Identity=27.2340425531915, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788225, Length=236, Percent_Identity=26.271186440678, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI48994943, Length=229, Percent_Identity=27.0742358078603, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1790162, Length=239, Percent_Identity=25.9414225941423, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787041, Length=210, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789672, Length=225, Percent_Identity=24.8888888888889, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788210, Length=221, Percent_Identity=26.6968325791855, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787029, Length=228, Percent_Identity=27.1929824561404, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789873, Length=177, Percent_Identity=28.8135593220339, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786803, Length=223, Percent_Identity=27.3542600896861, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787164, Length=227, Percent_Identity=26.8722466960352, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=25.5, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786872, Length=228, Percent_Identity=24.5614035087719, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786345, Length=238, Percent_Identity=25.2100840336134, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789032, Length=223, Percent_Identity=25.1121076233184, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789586, Length=238, Percent_Identity=24.7899159663866, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786698, Length=193, Percent_Identity=28.4974093264249, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786253, Length=227, Percent_Identity=27.3127753303965, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788450, Length=228, Percent_Identity=26.7543859649123, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48995001, Length=227, Percent_Identity=26.431718061674, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=28.8461538461538, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787972, Length=235, Percent_Identity=26.3829787234043, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789962, Length=230, Percent_Identity=25.2173913043478, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1788053, Length=178, Percent_Identity=26.9662921348315, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787712, Length=225, Percent_Identity=24.4444444444444, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787547, Length=227, Percent_Identity=25.5506607929515, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=211, Percent_Identity=30.8056872037915, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI71983516, Length=234, Percent_Identity=30.3418803418803, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71983510, Length=234, Percent_Identity=30.3418803418803, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71983523, Length=234, Percent_Identity=30.3418803418803, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17510237, Length=240, Percent_Identity=27.9166666666667, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115533608, Length=173, Percent_Identity=32.3699421965318, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=220, Percent_Identity=28.6363636363636, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17543740, Length=208, Percent_Identity=25.9615384615385, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17565938, Length=239, Percent_Identity=25.1046025104602, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574150, Length=208, Percent_Identity=28.3653846153846, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI116007328, Length=208, Percent_Identity=28.3653846153846, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24581191, Length=245, Percent_Identity=26.9387755102041, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24581189, Length=245, Percent_Identity=26.9387755102041, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24581193, Length=245, Percent_Identity=26.9387755102041, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24581195, Length=245, Percent_Identity=26.9387755102041, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17136662, Length=216, Percent_Identity=27.3148148148148, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24643674, Length=225, Percent_Identity=24.8888888888889, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574259, Length=217, Percent_Identity=25.8064516129032, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221512771, Length=228, Percent_Identity=24.1228070175439, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 30741; Mature: 30741

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNTVNIFEDDRPEGSDGADQMGHFVTGELDLSHGVALYLEDITVSFDGFKALNNLNLEI
CCCCEECCCCCCCCCCCCHHHCCCEEEEEEECCCCEEEEEEEEEEEECCHHHHCCCEEEE
NAGELRCIIGPNGAGKTTMMDVITGKTRPDSGKAYFGQSIDLTRLTEPEIAHVGIGRKFQ
ECCEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEECCCCCEEEECCCCCCC
KPTIFEQHTVFENLELAMKTDKRVWKSLMAWLAGDERDKIAETLRLIRLDGEADRQAGLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEECCCCCHHHHHH
SHGQKQWLEIGMLLMQEPKLLLLDEPVAGMTDDETMRTAELFVSLAGKHSLVVVEHDMAF
HCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHH
VEKLGGLVTVLHEGSVLAEGNLATVQNDHRVIEVYLGR
HHHHCCEEEEEECCCEEECCCEEEEECCCEEEEEEECC
>Mature Secondary Structure
MLNTVNIFEDDRPEGSDGADQMGHFVTGELDLSHGVALYLEDITVSFDGFKALNNLNLEI
CCCCEECCCCCCCCCCCCHHHCCCEEEEEEECCCCEEEEEEEEEEEECCHHHHCCCEEEE
NAGELRCIIGPNGAGKTTMMDVITGKTRPDSGKAYFGQSIDLTRLTEPEIAHVGIGRKFQ
ECCEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEECCCCCEEEECCCCCCC
KPTIFEQHTVFENLELAMKTDKRVWKSLMAWLAGDERDKIAETLRLIRLDGEADRQAGLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEECCCCCHHHHHH
SHGQKQWLEIGMLLMQEPKLLLLDEPVAGMTDDETMRTAELFVSLAGKHSLVVVEHDMAF
HCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHH
VEKLGGLVTVLHEGSVLAEGNLATVQNDHRVIEVYLGR
HHHHCCEEEEEECCCEEECCCEEEEECCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]

Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]