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The map label for this gene is ureD

Identifier: 71907062

GI number: 71907062

Start: 1555826

End: 1556692

Strand: Reverse

Name: ureD

Synonym: Daro_1430

Alternate gene names: 71907062

Gene position: 1556692-1555826 (Counterclockwise)

Preceding gene: 71907066

Following gene: 71907061

Centisome position: 34.58

GC content: 64.82

Gene sequence:

>867_bases
ATGACCTCCCGCCTTCCAATATCGCAGCCTGAGCATTCACCGAGCTGGCATGCAGAGCTGCATCTTGGCTTCGCCCGTGC
CGGCGAACGGACAGTGCTGCGCGAAAACCGGCACCGCGGGCCGTTGCGTGTGCAGAAGGCGCTGTACCCCGAAGGCGAAG
CAGTCTGTCAGACCATTGTGCTGCACCCGCCATCCGGCATTGCCGGTGGCGATCATCTGGCGATTTCGGCCGAGGTTGGT
GAAGGTTCCCATGCCCAACTGACCACACCGGGCGCTGGCAAGTGGTATCGCAGCGGCGGCGCGGAAGCCTCACAGCGCGT
TGCTTTCACGGTCGGCGAAGGGGCGACGCTGGAATGGTTGCCGCAGGAAACCATCGTGTTCGATGGTGCGCGGGCGCGGA
TGGAAACGCAGGTCGATCTCGCAGCCGACAGCCGCTATATCGGCTGGGACATTCTGTGCCTTGGCCGCGTGGCGGCGGGC
GAGCGTTTCGAAAAGGGTCGGTTCGACCTGTTTCTCCAGGTTAATAGAGACCAGCGGCCGATCTGGATTGAGCGCGGTGG
CTTCGATGGCAGCGACCCGATGCTGATTAGCCCCGCCGGCTGGGCCGGTGCCACGGTGTGCGGCACCTTGCTGTGCGCCT
TCCCGGAATGGCCGATGCAAGCGAGCGCGCTGCTCGAAGCGTGCCGCAAGATCGTCCCCGCCGATGGCGCCCAGCATGGC
CTGAGCGCCTTGCCTGGCGTACTAATCGCCCGTTACCTCGGCAACAGCAGCGAAGCCGCCCGTTTGTGGTTCGCGGAACT
TTGGACCATCCTGCGCCCGGCCTGCTGCGGTCGACCGGCCGTCATCCCCCGAATCTGGAATACCTGA

Upstream 100 bases:

>100_bases
GCATATCTTGAAAGGCTGGTTGTGGCCGAGAGCGGGCTAAATTCGCTCTGCGTATTCCTGCGTATTCCCCGCCAACTTGG
CTTTCCCGGATAATCCGGCC

Downstream 100 bases:

>100_bases
GGAGTCTTCATGGAACTGACACCCCGCGAGAAAGACAAGTTGCTGATCTTCACCGCCGGCCTGCTCGCCGAGCGGCGCCA
GGCCAAGGGCCTGAAGCTGA

Product: urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MTSRLPISQPEHSPSWHAELHLGFARAGERTVLRENRHRGPLRVQKALYPEGEAVCQTIVLHPPSGIAGGDHLAISAEVG
EGSHAQLTTPGAGKWYRSGGAEASQRVAFTVGEGATLEWLPQETIVFDGARARMETQVDLAADSRYIGWDILCLGRVAAG
ERFEKGRFDLFLQVNRDQRPIWIERGGFDGSDPMLISPAGWAGATVCGTLLCAFPEWPMQASALLEACRKIVPADGAQHG
LSALPGVLIARYLGNSSEAARLWFAELWTILRPACCGRPAVIPRIWNT

Sequences:

>Translated_288_residues
MTSRLPISQPEHSPSWHAELHLGFARAGERTVLRENRHRGPLRVQKALYPEGEAVCQTIVLHPPSGIAGGDHLAISAEVG
EGSHAQLTTPGAGKWYRSGGAEASQRVAFTVGEGATLEWLPQETIVFDGARARMETQVDLAADSRYIGWDILCLGRVAAG
ERFEKGRFDLFLQVNRDQRPIWIERGGFDGSDPMLISPAGWAGATVCGTLLCAFPEWPMQASALLEACRKIVPADGAQHG
LSALPGVLIARYLGNSSEAARLWFAELWTILRPACCGRPAVIPRIWNT
>Mature_287_residues
TSRLPISQPEHSPSWHAELHLGFARAGERTVLRENRHRGPLRVQKALYPEGEAVCQTIVLHPPSGIAGGDHLAISAEVGE
GSHAQLTTPGAGKWYRSGGAEASQRVAFTVGEGATLEWLPQETIVFDGARARMETQVDLAADSRYIGWDILCLGRVAAGE
RFEKGRFDLFLQVNRDQRPIWIERGGFDGSDPMLISPAGWAGATVCGTLLCAFPEWPMQASALLEACRKIVPADGAQHGL
SALPGVLIARYLGNSSEAARLWFAELWTILRPACCGRPAVIPRIWNT

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_DECAR (Q47G52)

Other databases:

- EMBL:   CP000089
- RefSeq:   YP_284649.1
- STRING:   Q47G52
- GeneID:   3569076
- GenomeReviews:   CP000089_GR
- KEGG:   dar:Daro_1430
- NMPDR:   fig|159087.4.peg.1283
- eggNOG:   COG0829
- HOGENOM:   HBG711156
- OMA:   CLGRPVM
- ProtClustDB:   CLSK2525819
- BioCyc:   DARO159087:DARO_1430-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 31295; Mature: 31164

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRLPISQPEHSPSWHAELHLGFARAGERTVLRENRHRGPLRVQKALYPEGEAVCQTIV
CCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCCEEEHHHCCCCCHHEEEEEE
LHPPSGIAGGDHLAISAEVGEGSHAQLTTPGAGKWYRSGGAEASQRVAFTVGEGATLEWL
EECCCCCCCCCEEEEEEECCCCCCCEEECCCCCCHHHCCCCCCCCEEEEEECCCCEEEEC
PQETIVFDGARARMETQVDLAADSRYIGWDILCLGRVAAGERFEKGRFDLFLQVNRDQRP
CCCEEEECCCHHCEEEEEEEECCCEECCEEEEEECHHHCCCCCCCCCEEEEEEECCCCCC
IWIERGGFDGSDPMLISPAGWAGATVCGTLLCAFPEWPMQASALLEACRKIVPADGAQHG
EEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHH
LSALPGVLIARYLGNSSEAARLWFAELWTILRPACCGRPAVIPRIWNT
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TSRLPISQPEHSPSWHAELHLGFARAGERTVLRENRHRGPLRVQKALYPEGEAVCQTIV
CCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCCEEEHHHCCCCCHHEEEEEE
LHPPSGIAGGDHLAISAEVGEGSHAQLTTPGAGKWYRSGGAEASQRVAFTVGEGATLEWL
EECCCCCCCCCEEEEEEECCCCCCCEEECCCCCCHHHCCCCCCCCEEEEEECCCCEEEEC
PQETIVFDGARARMETQVDLAADSRYIGWDILCLGRVAAGERFEKGRFDLFLQVNRDQRP
CCCEEEECCCHHCEEEEEEEECCCEECCEEEEEECHHHCCCCCCCCCEEEEEEECCCCCC
IWIERGGFDGSDPMLISPAGWAGATVCGTLLCAFPEWPMQASALLEACRKIVPADGAQHG
EEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHH
LSALPGVLIARYLGNSSEAARLWFAELWTILRPACCGRPAVIPRIWNT
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA