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The map label for this gene is ihfA1 [H]

Identifier: 71906960

GI number: 71906960

Start: 1443950

End: 1444291

Strand: Reverse

Name: ihfA1 [H]

Synonym: Daro_1327

Alternate gene names: 71906960

Gene position: 1444291-1443950 (Counterclockwise)

Preceding gene: 71906961

Following gene: 71906955

Centisome position: 32.09

GC content: 53.51

Gene sequence:

>342_bases
ATGTCCTTCAGAAACCATGCAAGCATGACGATAACCAAAGCAGACCTGGCCGAACACCTCTCCAACGAGATCGGATTCAA
CAACCGTGAAGCCAAGGAAGTGGTTGAGGCCTTTTTTAAGGAATTGTCCGATTGCCTCGAGCGTGGCGAGGAGATCAAAC
TGGCGGGCTTCGGCGTATTTAGCATGCGAAACAAACCGGAACGCCCCGGCCGCAATCCGAAGACGGGTGAGGAAATACCC
ATCACCGCGCGTCGAGTTGTAACCTTCCATGCCAGTGGCTGCCTTAAATCAGCTGTCGAGTCGAGTCCCAACCTTTCACT
CAAGGCCGTGAAAGCTGCGTAA

Upstream 100 bases:

>100_bases
GTGGGGGCGCTGGACCTTATGTTCGTTACCCAGGACCACTTCACAAAAGCCTCTCCTTGAGAGGCTTTTGTGTTTTCAGT
TTTGAGCGTGAATTCGACGC

Downstream 100 bases:

>100_bases
CAATCGCCAGAGATCACGACAAAAAAATAGGCCCCGTTTGATCGGAGCCTATTGATTTAAGCGCGCCAGGATCGAATCAC
AATCCACCAGGCAAATCTCA

Product: integration host factor, alpha subunit

Products: NA

Alternate protein names: IHF-alpha 1 [H]

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MSFRNHASMTITKADLAEHLSNEIGFNNREAKEVVEAFFKELSDCLERGEEIKLAGFGVFSMRNKPERPGRNPKTGEEIP
ITARRVVTFHASGCLKSAVESSPNLSLKAVKAA

Sequences:

>Translated_113_residues
MSFRNHASMTITKADLAEHLSNEIGFNNREAKEVVEAFFKELSDCLERGEEIKLAGFGVFSMRNKPERPGRNPKTGEEIP
ITARRVVTFHASGCLKSAVESSPNLSLKAVKAA
>Mature_112_residues
SFRNHASMTITKADLAEHLSNEIGFNNREAKEVVEAFFKELSDCLERGEEIKLAGFGVFSMRNKPERPGRNPKTGEEIPI
TARRVVTFHASGCLKSAVESSPNLSLKAVKAA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=94, Percent_Identity=57.4468085106383, Blast_Score=119, Evalue=5e-29,
Organism=Escherichia coli, GI1786644, Length=89, Percent_Identity=32.5842696629214, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 12449; Mature: 12318

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFRNHASMTITKADLAEHLSNEIGFNNREAKEVVEAFFKELSDCLERGEEIKLAGFGVF
CCCCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEE
SMRNKPERPGRNPKTGEEIPITARRVVTFHASGCLKSAVESSPNLSLKAVKAA
CCCCCCCCCCCCCCCCCCCCCCHHHEEEECCHHHHHHHHHCCCCCEEEEECCC
>Mature Secondary Structure 
SFRNHASMTITKADLAEHLSNEIGFNNREAKEVVEAFFKELSDCLERGEEIKLAGFGVF
CCCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEE
SMRNKPERPGRNPKTGEEIPITARRVVTFHASGCLKSAVESSPNLSLKAVKAA
CCCCCCCCCCCCCCCCCCCCCCHHHEEEECCHHHHHHHHHCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA