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The map label for this gene is yddH [C]

Identifier: 71906826

GI number: 71906826

Start: 1293793

End: 1294335

Strand: Reverse

Name: yddH [C]

Synonym: Daro_1187

Alternate gene names: 71906826

Gene position: 1294335-1293793 (Counterclockwise)

Preceding gene: 71906827

Following gene: 71906823

Centisome position: 28.76

GC content: 56.72

Gene sequence:

>543_bases
ATGCAAGCATTGAACCTGAGCAAGGCGTTTACCCTGATCGAATCGGGGCCGGTGGTCCTCATCACCACCCATGACGTGAA
GAAAAACAACATCATGACCATCTCGTGGACCATGGTGATGGATTTCACGCCGGTATTCGCCATCACCACGGGGGAATGGA
ATTACTCCTTCTCAGCGTTGCGCAAGCATCGTGAGTGCGTCATCGCCATTCCTACCGTCGACCTGCTGGATACGGTCGTT
GGCATCGGGACCTGCTCCGGGGCTGATACCGACAAGTTCGCCAAGTTCCAGCTAACGCCGGTGCAGGCTAGCCTCGTCAG
GCCACCCCTGATCAAGGAATGCCTCGCCAACATCGAATGCAAGGTCATCGACATCGTCGAAAAGCACAACATCATCGTGC
TGGAGGGGGTCGCCGCCTACATCGACAGCGAGCGCAAGGAAAAACGCACGGTTCACGCAGTGGGTGACGGAACCTTCATC
GTCGACGGGCGCAAGATCGATCGAAAAAAGATGATGGCCGCCAAGCTTCCGCCCGGCGTTTAG

Upstream 100 bases:

>100_bases
GCGACAACCCGAACGAACTCGACGACGCGCCAACGCTGCTCTGAATTTCACGGGTAATATTGAAGGCACTAGCCAGGCAT
CACTATCAAGAGGTGCTCTC

Downstream 100 bases:

>100_bases
CGGGACCGAACCAGGATGTAGCCCCGGTTTTCCGCCACATCCCTGGTCCGCATCCCCTGGATGAGGGTCGCCAAGGGCAT
CCAGACCCAGGGGTGATAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MQALNLSKAFTLIESGPVVLITTHDVKKNNIMTISWTMVMDFTPVFAITTGEWNYSFSALRKHRECVIAIPTVDLLDTVV
GIGTCSGADTDKFAKFQLTPVQASLVRPPLIKECLANIECKVIDIVEKHNIIVLEGVAAYIDSERKEKRTVHAVGDGTFI
VDGRKIDRKKMMAAKLPPGV

Sequences:

>Translated_180_residues
MQALNLSKAFTLIESGPVVLITTHDVKKNNIMTISWTMVMDFTPVFAITTGEWNYSFSALRKHRECVIAIPTVDLLDTVV
GIGTCSGADTDKFAKFQLTPVQASLVRPPLIKECLANIECKVIDIVEKHNIIVLEGVAAYIDSERKEKRTVHAVGDGTFI
VDGRKIDRKKMMAAKLPPGV
>Mature_180_residues
MQALNLSKAFTLIESGPVVLITTHDVKKNNIMTISWTMVMDFTPVFAITTGEWNYSFSALRKHRECVIAIPTVDLLDTVV
GIGTCSGADTDKFAKFQLTPVQASLVRPPLIKECLANIECKVIDIVEKHNIIVLEGVAAYIDSERKEKRTVHAVGDGTFI
VDGRKIDRKKMMAAKLPPGV

Specific function: Unknown

COG id: COG1853

COG function: function code R; Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flavoredoxin family [H]

Homologues:

Organism=Escherichia coli, GI87081916, Length=180, Percent_Identity=28.3333333333333, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002563
- InterPro:   IPR012349
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01613 Flavin_Reduct [H]

EC number: NA

Molecular weight: Translated: 19843; Mature: 19843

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALNLSKAFTLIESGPVVLITTHDVKKNNIMTISWTMVMDFTPVFAITTGEWNYSFSAL
CCCCCCHHEEEEEECCCEEEEEECCCCCCCEEEEEEEEEEECCEEEEEEECCCCCCHHHH
RKHRECVIAIPTVDLLDTVVGIGTCSGADTDKFAKFQLTPVQASLVRPPLIKECLANIEC
HCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHCCCHHHHHHHCCCCE
KVIDIVEKHNIIVLEGVAAYIDSERKEKRTVHAVGDGTFIVDGRKIDRKKMMAAKLPPGV
EEEEEECCCCEEEEECHHHHHCCCCHHCEEEEEECCCEEEEECCEECHHHHHHCCCCCCC
>Mature Secondary Structure
MQALNLSKAFTLIESGPVVLITTHDVKKNNIMTISWTMVMDFTPVFAITTGEWNYSFSAL
CCCCCCHHEEEEEECCCEEEEEECCCCCCCEEEEEEEEEEECCEEEEEEECCCCCCHHHH
RKHRECVIAIPTVDLLDTVVGIGTCSGADTDKFAKFQLTPVQASLVRPPLIKECLANIEC
HCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHCCCHHHHHHHCCCCE
KVIDIVEKHNIIVLEGVAAYIDSERKEKRTVHAVGDGTFIVDGRKIDRKKMMAAKLPPGV
EEEEEECCCCEEEEECHHHHHCCCCHHCEEEEEECCCEEEEECCEECHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]