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The map label for this gene is nudC [H]

Identifier: 71906713

GI number: 71906713

Start: 1177982

End: 1178767

Strand: Reverse

Name: nudC [H]

Synonym: Daro_1074

Alternate gene names: 71906713

Gene position: 1178767-1177982 (Counterclockwise)

Preceding gene: 71906714

Following gene: 71906712

Centisome position: 26.19

GC content: 62.98

Gene sequence:

>786_bases
ATGACTCAAACCAGTTACTGGATTCTGCGCTCCGAACATCGCCTGCTGACGATCACCGGCCATGGGGCGGAGGCGATTTT
CCCGTCTGCCCTGCCAGCCGATTTCAAGCATCCGGCCAACGCACTTCCTGTCGGACAACTCAACGGATGCCCATGCTATG
CCGCCGATGTCGAGCATCTGCCGGCCATCCCCGGCAGCGAGCCAACGCCGTTGCGCACCATCTTCCAGCTGGCCGGAGCC
GAAACCTTCGCGCTGGCCGGTCGCGCCACGCAATTGCTGGACTGGCAGAACAACCACCGTTTCTGCGGCAAATGCGGGAC
GCCAACAGCCATGAAAACCGGCGAGCAGGCCATGCAATGCCCGGCCTGCGGACTACTGGCCTATCCACGCATCTCCCCGG
CGGTGATGGTGCTGGTGCGCGATGGCGACAAACTGCTGCTCGGCCGTAGCCCGCACTTCAAGCCGGGCGTCTTCAGCGCC
CTGGCCGGTTTTGTCGAACCCGGCGAAACGCTGGAGGAATGCGCCGCCCGCGAGGTTCGTGAGGAAGTCGGCATCGAGAT
CGCCAACCTCCGCTATTTCCACAGCCAGCCCTGGCCTTTCCCCAACTCGCTGATGGTCGCCTTCTTCGCCGACTACGCCG
GCGGCACGATCACGCCGGATCCGAACGAGATCGAGGCCGCCGACTGGTTCCCGCTCGATGCCCTGCCCCTTCTGCCGGAG
CCGATCAGCATCTCGCGACGATTGATCGATACAGCCCGAAAACAGACCGATAACGCTAATAACTAA

Upstream 100 bases:

>100_bases
GCATGGCGCTCGGCACGCTGGCACCGAACGCCGAAATGACGATTTACCGCCTGCCCGAGCATGGCTCGGCACAGACAATC
TCCATTTAAGTGACCTCAGC

Downstream 100 bases:

>100_bases
GCAGGAAACAGCAAAATGACCCGACGCAAAACCAAGCTTCACCACCACCCCACGACTCGCCCGGCCGCACGGGCCAACCT
GCTTTTTGTGCATGGCGGCT

Product: NUDIX hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MTQTSYWILRSEHRLLTITGHGAEAIFPSALPADFKHPANALPVGQLNGCPCYAADVEHLPAIPGSEPTPLRTIFQLAGA
ETFALAGRATQLLDWQNNHRFCGKCGTPTAMKTGEQAMQCPACGLLAYPRISPAVMVLVRDGDKLLLGRSPHFKPGVFSA
LAGFVEPGETLEECAAREVREEVGIEIANLRYFHSQPWPFPNSLMVAFFADYAGGTITPDPNEIEAADWFPLDALPLLPE
PISISRRLIDTARKQTDNANN

Sequences:

>Translated_261_residues
MTQTSYWILRSEHRLLTITGHGAEAIFPSALPADFKHPANALPVGQLNGCPCYAADVEHLPAIPGSEPTPLRTIFQLAGA
ETFALAGRATQLLDWQNNHRFCGKCGTPTAMKTGEQAMQCPACGLLAYPRISPAVMVLVRDGDKLLLGRSPHFKPGVFSA
LAGFVEPGETLEECAAREVREEVGIEIANLRYFHSQPWPFPNSLMVAFFADYAGGTITPDPNEIEAADWFPLDALPLLPE
PISISRRLIDTARKQTDNANN
>Mature_260_residues
TQTSYWILRSEHRLLTITGHGAEAIFPSALPADFKHPANALPVGQLNGCPCYAADVEHLPAIPGSEPTPLRTIFQLAGAE
TFALAGRATQLLDWQNNHRFCGKCGTPTAMKTGEQAMQCPACGLLAYPRISPAVMVLVRDGDKLLLGRSPHFKPGVFSAL
AGFVEPGETLEECAAREVREEVGIEIANLRYFHSQPWPFPNSLMVAFFADYAGGTITPDPNEIEAADWFPLDALPLLPEP
ISISRRLIDTARKQTDNANN

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI50593112, Length=176, Percent_Identity=39.7727272727273, Blast_Score=130, Evalue=9e-31,
Organism=Homo sapiens, GI13899267, Length=171, Percent_Identity=39.766081871345, Blast_Score=129, Evalue=3e-30,
Organism=Escherichia coli, GI48994995, Length=246, Percent_Identity=40.2439024390244, Blast_Score=179, Evalue=1e-46,
Organism=Caenorhabditis elegans, GI71986510, Length=151, Percent_Identity=38.4105960264901, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI212645999, Length=151, Percent_Identity=38.4105960264901, Blast_Score=105, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6321371, Length=145, Percent_Identity=33.7931034482759, Blast_Score=85, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 28421; Mature: 28289

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTSYWILRSEHRLLTITGHGAEAIFPSALPADFKHPANALPVGQLNGCPCYAADVEHL
CCCCEEEEEECCCEEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHC
PAIPGSEPTPLRTIFQLAGAETFALAGRATQLLDWQNNHRFCGKCGTPTAMKTGEQAMQC
CCCCCCCCCHHHHHHHHHCCCCEEECCCHHHEEECCCCCEEECCCCCCHHHHCCHHHHHC
PACGLLAYPRISPAVMVLVRDGDKLLLGRSPHFKPGVFSALAGFVEPGETLEECAAREVR
CCCCEEECCCCCCEEEEEEECCCEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
EEVGIEIANLRYFHSQPWPFPNSLMVAFFADYAGGTITPDPNEIEAADWFPLDALPLLPE
HHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PISISRRLIDTARKQTDNANN
CHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TQTSYWILRSEHRLLTITGHGAEAIFPSALPADFKHPANALPVGQLNGCPCYAADVEHL
CCCEEEEEECCCEEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHC
PAIPGSEPTPLRTIFQLAGAETFALAGRATQLLDWQNNHRFCGKCGTPTAMKTGEQAMQC
CCCCCCCCCHHHHHHHHHCCCCEEECCCHHHEEECCCCCEEECCCCCCHHHHCCHHHHHC
PACGLLAYPRISPAVMVLVRDGDKLLLGRSPHFKPGVFSALAGFVEPGETLEECAAREVR
CCCCEEECCCCCCEEEEEEECCCEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
EEVGIEIANLRYFHSQPWPFPNSLMVAFFADYAGGTITPDPNEIEAADWFPLDALPLLPE
HHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PISISRRLIDTARKQTDNANN
CHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA