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The map label for this gene is nirM [H]

Identifier: 71906645

GI number: 71906645

Start: 1099776

End: 1100114

Strand: Reverse

Name: nirM [H]

Synonym: Daro_1006

Alternate gene names: 71906645

Gene position: 1100114-1099776 (Counterclockwise)

Preceding gene: 71906646

Following gene: 71906639

Centisome position: 24.44

GC content: 63.13

Gene sequence:

>339_bases
ATGAACCAGCAACTGACCAATTCCCTGCTGCTTGGCCTTGCCGCGGCTGTCATCCTCATTGCCACTCCGCAGGCCCAGGC
CGCCGACGGCGAAGCGATCGTCAAGAAAGCCCGCTGCGTCGCTTGCCACGCCGTCGATACCAAACGTGTCGGCCCAGCCT
ACAAGGACGTCGCCGCCAAGTACAAGGGCGACACCAAGGCGCCGGCCATGCTCTTCGACAAGGTTCGCCACGGCGGATCC
GGCAACTGGGGCCAGGTGGCGATGATTCCCCACCCGGCTGACAAGATCAGCGATGACGACCTGAAAGCGGCGATTCACTG
GGTTCTGGCGCTGGAGTAA

Upstream 100 bases:

>100_bases
GCTCGACGGGAAAGGCCTTCCATACCCGTTCGCGACTGTTCACCGATGCCGAATGGGCCGAACTGCAGGCGGCCGGCCTC
GTTTAATCAAAGGAAAACCC

Downstream 100 bases:

>100_bases
AAGGACCACCGCGCCACGGTTTCAGCGCAAATGAAGGGAGAACAGCAAACTCCCCAACAAGAATGGCCGCAGGCCATCGA
TGCGAAACCGAGGGGCTGCC

Product: cytochrome c, class I

Products: NA

Alternate protein names: Cytochrome C8; Cytochrome c551 [H]

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MNQQLTNSLLLGLAAAVILIATPQAQAADGEAIVKKARCVACHAVDTKRVGPAYKDVAAKYKGDTKAPAMLFDKVRHGGS
GNWGQVAMIPHPADKISDDDLKAAIHWVLALE

Sequences:

>Translated_112_residues
MNQQLTNSLLLGLAAAVILIATPQAQAADGEAIVKKARCVACHAVDTKRVGPAYKDVAAKYKGDTKAPAMLFDKVRHGGS
GNWGQVAMIPHPADKISDDDLKAAIHWVLALE
>Mature_112_residues
MNQQLTNSLLLGLAAAVILIATPQAQAADGEAIVKKARCVACHAVDTKRVGPAYKDVAAKYKGDTKAPAMLFDKVRHGGS
GNWGQVAMIPHPADKISDDDLKAAIHWVLALE

Specific function: Electron donor for cytochrome cd1 in nitrite and nitrate respiration [H]

COG id: COG4654

COG function: function code C; Cytochrome c551/c552

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002324 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 11843; Mature: 11843

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00165 DEHYDRATASE_SER_THR ; PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQQLTNSLLLGLAAAVILIATPQAQAADGEAIVKKARCVACHAVDTKRVGPAYKDVAAK
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
YKGDTKAPAMLFDKVRHGGSGNWGQVAMIPHPADKISDDDLKAAIHWVLALE
CCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MNQQLTNSLLLGLAAAVILIATPQAQAADGEAIVKKARCVACHAVDTKRVGPAYKDVAAK
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
YKGDTKAPAMLFDKVRHGGSGNWGQVAMIPHPADKISDDDLKAAIHWVLALE
CCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2152881; 2155133; 10984043; 4362497; 6283101; 96440; 2174259; 1654086; 8218218 [H]