Click here to switch to the map view.

The map label for this gene is fliC [H]

Identifier: 71906423

GI number: 71906423

Start: 849540

End: 850361

Strand: Reverse

Name: fliC [H]

Synonym: Daro_0784

Alternate gene names: 71906423

Gene position: 850361-849540 (Counterclockwise)

Preceding gene: 71906426

Following gene: 71906422

Centisome position: 18.89

GC content: 60.46

Gene sequence:

>822_bases
ATGGCATCAGTCATCAATACCAACCTGGCATCCCTGAACGCCCAGCGTAACCTCACCACTTCCCAGAAGTCGCTGAACAC
CTCCCTGCAACGCCTGTCGTCCGGCTTGCGCGTCAATAGCGCCCGCGACGACGCTGCTGGCCTGGGTATCGCCACCAACA
TGTCCGCCCAAAGCCGCGGCATGACGGTCGCCACCCGCAATGCCAACGACGGCATCTCGCTTGCCCAGACGGCTGAAGGC
GGCTTGGCCACCATCACCGACCACCTGCAGCGGATGCGTGAATTGGCCACCCAAGCGGCATCCGGTCAATACGATTCAGT
CAACTTGGCAGCGCTGGACAAGGAATATCAGGCACTGCAGTCGGAAATCTCCCGTGTTGCCACCGCAACGACTTTCAACG
GCAAGCAGATTCTGGGCTCCGACAGCACCATGTCCTTCCAGATTGGTGCCGGCACGGCCAGCGAAAACCAGATTGCCGTA
ACGACAGTCACCGCTTCGATGGCAACCGGTTTGTTTACCTCCACTGACATCACCACTGCCGCTGGCGCCAAGACCGTCAT
GGGAACCCTGGACACCGCGCTCAATACGGTAAACAGTGCTCGCGCTGGCCTCGGCGCCCTGCAGTCCCGCTTCGATGGCG
TCGTCACCCAACTGGGCGCCCAGATCGAGAACACTGAAGCCGCCCGCAGCCGCATCATGGATACCGATTACGCTGCTGAA
ACCGCCAACTTGAGCCGCTCTCAGATCCTGCAACAAGCCGGTACTGCCATGCTGGCCCAAGCCAACAGCATCCCGCAAAA
CGTGCTGTCCCTGCTCAAGTAA

Upstream 100 bases:

>100_bases
TTATTTGATTCAAGGGCGATAAAAAGCCCGTTGAAACAAACCTGAAAGGCCCTCTCGGCTGATCAACATGTAGGCAAACA
GACATTTTTTGGAGATTATC

Downstream 100 bases:

>100_bases
GCTGAAGTGCGCTAGGGGGGAACCCCCCTGCCAGAACGGGCGCAGCAACGGTAACGTTGCTGCGCCCATTGCCCATCATG
GCTACAGGAGTTTCTCATGA

Product: flagellin, C-terminal:flagellin, N-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MASVINTNLASLNAQRNLTTSQKSLNTSLQRLSSGLRVNSARDDAAGLGIATNMSAQSRGMTVATRNANDGISLAQTAEG
GLATITDHLQRMRELATQAASGQYDSVNLAALDKEYQALQSEISRVATATTFNGKQILGSDSTMSFQIGAGTASENQIAV
TTVTASMATGLFTSTDITTAAGAKTVMGTLDTALNTVNSARAGLGALQSRFDGVVTQLGAQIENTEAARSRIMDTDYAAE
TANLSRSQILQQAGTAMLAQANSIPQNVLSLLK

Sequences:

>Translated_273_residues
MASVINTNLASLNAQRNLTTSQKSLNTSLQRLSSGLRVNSARDDAAGLGIATNMSAQSRGMTVATRNANDGISLAQTAEG
GLATITDHLQRMRELATQAASGQYDSVNLAALDKEYQALQSEISRVATATTFNGKQILGSDSTMSFQIGAGTASENQIAV
TTVTASMATGLFTSTDITTAAGAKTVMGTLDTALNTVNSARAGLGALQSRFDGVVTQLGAQIENTEAARSRIMDTDYAAE
TANLSRSQILQQAGTAMLAQANSIPQNVLSLLK
>Mature_272_residues
ASVINTNLASLNAQRNLTTSQKSLNTSLQRLSSGLRVNSARDDAAGLGIATNMSAQSRGMTVATRNANDGISLAQTAEGG
LATITDHLQRMRELATQAASGQYDSVNLAALDKEYQALQSEISRVATATTFNGKQILGSDSTMSFQIGAGTASENQIAVT
TVTASMATGLFTSTDITTAAGAKTVMGTLDTALNTVNSARAGLGALQSRFDGVVTQLGAQIENTEAARSRIMDTDYAAET
ANLSRSQILQQAGTAMLAQANSIPQNVLSLLK

Specific function: Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella [H]

COG id: COG1344

COG function: function code N; Flagellin and related hook-associated proteins

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial flagellin family [H]

Homologues:

Organism=Escherichia coli, GI1788232, Length=150, Percent_Identity=48.6666666666667, Blast_Score=140, Evalue=8e-35,

Paralogues:

None

Copy number: 200,000-400,000 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001492
- InterPro:   IPR001029 [H]

Pfam domain/function: PF00700 Flagellin_C; PF00669 Flagellin_N [H]

EC number: NA

Molecular weight: Translated: 28299; Mature: 28168

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASVINTNLASLNAQRNLTTSQKSLNTSLQRLSSGLRVNSARDDAAGLGIATNMSAQSRG
CCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEECCCCCCCC
MTVATRNANDGISLAQTAEGGLATITDHLQRMRELATQAASGQYDSVNLAALDKEYQALQ
CEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHH
SEISRVATATTFNGKQILGSDSTMSFQIGAGTASENQIAVTTVTASMATGLFTSTDITTA
HHHHHHHHHCCCCCCEEECCCCEEEEEEECCCCCCCEEEEEEEHHHHHHCCCCCCCCCHH
AGAKTVMGTLDTALNTVNSARAGLGALQSRFDGVVTQLGAQIENTEAARSRIMDTDYAAE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHH
TANLSRSQILQQAGTAMLAQANSIPQNVLSLLK
HHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
>Mature Secondary Structure 
ASVINTNLASLNAQRNLTTSQKSLNTSLQRLSSGLRVNSARDDAAGLGIATNMSAQSRG
CCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEECCCCCCCC
MTVATRNANDGISLAQTAEGGLATITDHLQRMRELATQAASGQYDSVNLAALDKEYQALQ
CEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHH
SEISRVATATTFNGKQILGSDSTMSFQIGAGTASENQIAVTTVTASMATGLFTSTDITTA
HHHHHHHHHCCCCCCEEECCCCEEEEEEECCCCCCCEEEEEEEHHHHHHCCCCCCCCCHH
AGAKTVMGTLDTALNTVNSARAGLGALQSRFDGVVTQLGAQIENTEAARSRIMDTDYAAE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHH
TANLSRSQILQQAGTAMLAQANSIPQNVLSLLK
HHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8996114 [H]