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The map label for this gene is fliR [H]

Identifier: 71906400

GI number: 71906400

Start: 830981

End: 831763

Strand: Reverse

Name: fliR [H]

Synonym: Daro_0761

Alternate gene names: 71906400

Gene position: 831763-830981 (Counterclockwise)

Preceding gene: 71906401

Following gene: 71906387

Centisome position: 18.48

GC content: 56.07

Gene sequence:

>783_bases
ATGATCAGCATTGGGTCCGCCCAGATTGATGCGTGGATTGTGGCCTTTGTCTTTCCTCTGGCCCGCATCTTGGGATTTAT
TGCCGCCGCGCCGCTTTGGAGCACGGCAGGCATCCCGAGGCGAACCCGCCTGATACTTGCCATCTCGATCGCAGTAGCCA
TCACGCCGACCCTGCCGCCAATGCCCGGCGTTCAACCCGGATCGCTACCCGGCCTGTGGATACTTGCGCAACAGATGTTG
ATCGGGATCGGCATGGGATTCGCCGCCAAGATCGTGTTCACAGCTTTCGACATAGCGGGCGAATTTATCAGCTTCCAGAT
GGGCTTGGGGTTTGCCACCTTTTACGACCCGCTCAATTCCTCGCAAACGCCGGTCATCACCGAGTTCATTAGCCTGATCG
CCCTGCTCCTGTTTCTTTCCATGAACGGGCACCTGCTTTATCTGGCAACGCTGGCGCAGAGTTTTTCGGCTATCCCGGTT
AGCGCCACACCGCTTGGCGCATCCTCCTGGCTGAATTTGGCAGAACTAGGGAGCAAAATCTTTTCGGCAGGGCTGTTGCT
TTCGCTACCAATCATTGTCGCTCTGATGATTACCAATGTGGCGCTGGCCGTTCTGACGCGAGCTGCGCCGCAGTTGAATC
TATTTGCTCTCGGTTTCCCGCTGACCTTGATGGGAGGATTCGTTGCACTGGCCATCAGCCTGAACTACCTCGCCTCCCCA
CTGCAAGGTATTTTTGAATTCGGCATGAGCGCCATGCTTGGATTTGCCAGCACTCAAAACTAG

Upstream 100 bases:

>100_bases
ATGTTTGTGGTACTTCTACTCACAGGCCCCTGGATGATCCAGTACCTGGTGGACTATATCCAGCGCTTGTTTGGCAGCAT
TCCGCAATTGATCGGCTAGC

Downstream 100 bases:

>100_bases
GTCCTGAGTCCGCCGTTAATTCTGCAGGAAGGAGTCCGCCTGCTGACGCTGGACCAGCCGGATCGTTCCCTCTGCCACTC
GCCGAGCCCCGATGGTCTGC

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MISIGSAQIDAWIVAFVFPLARILGFIAAAPLWSTAGIPRRTRLILAISIAVAITPTLPPMPGVQPGSLPGLWILAQQML
IGIGMGFAAKIVFTAFDIAGEFISFQMGLGFATFYDPLNSSQTPVITEFISLIALLLFLSMNGHLLYLATLAQSFSAIPV
SATPLGASSWLNLAELGSKIFSAGLLLSLPIIVALMITNVALAVLTRAAPQLNLFALGFPLTLMGGFVALAISLNYLASP
LQGIFEFGMSAMLGFASTQN

Sequences:

>Translated_260_residues
MISIGSAQIDAWIVAFVFPLARILGFIAAAPLWSTAGIPRRTRLILAISIAVAITPTLPPMPGVQPGSLPGLWILAQQML
IGIGMGFAAKIVFTAFDIAGEFISFQMGLGFATFYDPLNSSQTPVITEFISLIALLLFLSMNGHLLYLATLAQSFSAIPV
SATPLGASSWLNLAELGSKIFSAGLLLSLPIIVALMITNVALAVLTRAAPQLNLFALGFPLTLMGGFVALAISLNYLASP
LQGIFEFGMSAMLGFASTQN
>Mature_260_residues
MISIGSAQIDAWIVAFVFPLARILGFIAAAPLWSTAGIPRRTRLILAISIAVAITPTLPPMPGVQPGSLPGLWILAQQML
IGIGMGFAAKIVFTAFDIAGEFISFQMGLGFATFYDPLNSSQTPVITEFISLIALLLFLSMNGHLLYLATLAQSFSAIPV
SATPLGASSWLNLAELGSKIFSAGLLLSLPIIVALMITNVALAVLTRAAPQLNLFALGFPLTLMGGFVALAISLNYLASP
LQGIFEFGMSAMLGFASTQN

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=246, Percent_Identity=41.0569105691057, Blast_Score=157, Evalue=5e-40,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27319; Mature: 27319

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISIGSAQIDAWIVAFVFPLARILGFIAAAPLWSTAGIPRRTRLILAISIAVAITPTLPP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHEEEEHHEECCCCCC
MPGVQPGSLPGLWILAQQMLIGIGMGFAAKIVFTAFDIAGEFISFQMGLGFATFYDPLNS
CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCC
SQTPVITEFISLIALLLFLSMNGHLLYLATLAQSFSAIPVSATPLGASSWLNLAELGSKI
CCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
FSAGLLLSLPIIVALMITNVALAVLTRAAPQLNLFALGFPLTLMGGFVALAISLNYLASP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
LQGIFEFGMSAMLGFASTQN
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MISIGSAQIDAWIVAFVFPLARILGFIAAAPLWSTAGIPRRTRLILAISIAVAITPTLPP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHEEEEHHEECCCCCC
MPGVQPGSLPGLWILAQQMLIGIGMGFAAKIVFTAFDIAGEFISFQMGLGFATFYDPLNS
CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCC
SQTPVITEFISLIALLLFLSMNGHLLYLATLAQSFSAIPVSATPLGASSWLNLAELGSKI
CCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
FSAGLLLSLPIIVALMITNVALAVLTRAAPQLNLFALGFPLTLMGGFVALAISLNYLASP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
LQGIFEFGMSAMLGFASTQN
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]