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The map label for this gene is yjcF [C]

Identifier: 71906323

GI number: 71906323

Start: 754988

End: 755635

Strand: Reverse

Name: yjcF [C]

Synonym: Daro_0684

Alternate gene names: 71906323

Gene position: 755635-754988 (Counterclockwise)

Preceding gene: 71906328

Following gene: 71906322

Centisome position: 16.79

GC content: 56.48

Gene sequence:

>648_bases
ATGGATTACCGCAGGACTCAATTGGTTCCAGGCATCAAGGTTGCAATTTGCGTTGCTGCTGTCTTCGTCGGCCACGCCTC
CGCATTTGCGGATTGTCGTAAAGAGCCCGGAGCACAGTGTCAGGGCGCAGTCCTGAAAAGCGTCATTTGGAAAAATGCCG
ACATCAGTGGCGGCAACTTCCGCAATGCCAATTTTGAAGGTGCAAATTTAGAGGGAACTCGGTTTAAGGGTGCCGATCTG
CGGGGGGCCAACCTGAAATCCGCCCGTCTCGAGCGTAGCGACCTCGCCGATGCCAATCTCGAAGGGGCCGACCTAAGGGG
CGCAAATCTTCGAAGTGCCAGCCTAACAAGGGCGCAACTTGGCAGCGCCAAATTATCCAAAGCCTTTTTGGAAGGCGCAG
ACCTTTCCAGTTCGCGCCTGATTGGCGCTGATTTGACCCGCGCCCAATTGGTTGGAGCTGACTTGCAACTTGTGGACCTG
CGCGGGGCACAGCTTGACGGCGCTTTCCTGAATTACTCGAACCTGAAGCAGGCAAACCTGAGCGGCTCCTCGATCCAGCG
CTTTCGAATCATCGGTGCGCGGCTAGCCGAGGCCATCTGGATTGACGGCACGGTGTGCAGTTCCACATCGGTCGGTTCGT
GCGAATAA

Upstream 100 bases:

>100_bases
ACCCAATTCCCTTAGATGGATTCCCGAATTTTCAACGACTAGCGGGCTCCTTAGGATGCTCTCGAAGGCGTGCCAATCTG
GCATCTAAAGCGAGGTCATC

Downstream 100 bases:

>100_bases
GTACGTCTATCGAACCACTCGACCAACTCGCTACGGAAGAATAGACATGCTGACAGTGCTGGCCGTCGTTTTCGTGATTG
CCTATGCGGCTATTGCCTTG

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MDYRRTQLVPGIKVAICVAAVFVGHASAFADCRKEPGAQCQGAVLKSVIWKNADISGGNFRNANFEGANLEGTRFKGADL
RGANLKSARLERSDLADANLEGADLRGANLRSASLTRAQLGSAKLSKAFLEGADLSSSRLIGADLTRAQLVGADLQLVDL
RGAQLDGAFLNYSNLKQANLSGSSIQRFRIIGARLAEAIWIDGTVCSSTSVGSCE

Sequences:

>Translated_215_residues
MDYRRTQLVPGIKVAICVAAVFVGHASAFADCRKEPGAQCQGAVLKSVIWKNADISGGNFRNANFEGANLEGTRFKGADL
RGANLKSARLERSDLADANLEGADLRGANLRSASLTRAQLGSAKLSKAFLEGADLSSSRLIGADLTRAQLVGADLQLVDL
RGAQLDGAFLNYSNLKQANLSGSSIQRFRIIGARLAEAIWIDGTVCSSTSVGSCE
>Mature_215_residues
MDYRRTQLVPGIKVAICVAAVFVGHASAFADCRKEPGAQCQGAVLKSVIWKNADISGGNFRNANFEGANLEGTRFKGADL
RGANLKSARLERSDLADANLEGADLRGANLRSASLTRAQLGSAKLSKAFLEGADLSSSRLIGADLTRAQLVGADLQLVDL
RGAQLDGAFLNYSNLKQANLSGSSIQRFRIIGARLAEAIWIDGTVCSSTSVGSCE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Drosophila melanogaster, GI221377802, Length=162, Percent_Identity=34.5679012345679, Blast_Score=74, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 22661; Mature: 22661

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYRRTQLVPGIKVAICVAAVFVGHASAFADCRKEPGAQCQGAVLKSVIWKNADISGGNF
CCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCC
RNANFEGANLEGTRFKGADLRGANLKSARLERSDLADANLEGADLRGANLRSASLTRAQL
CCCCCCCCCCCCCEECCCCCCCCCCHHHHCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
GSAKLSKAFLEGADLSSSRLIGADLTRAQLVGADLQLVDLRGAQLDGAFLNYSNLKQANL
CHHHHHHHHHCCCCCCCCEEECCCCHHHHHCCCCEEEEEECCCEECCEEECCCCCCCCCC
SGSSIQRFRIIGARLAEAIWIDGTVCSSTSVGSCE
CCCHHHHHHHHHHHHHHHEEECCEEECCCCCCCCC
>Mature Secondary Structure
MDYRRTQLVPGIKVAICVAAVFVGHASAFADCRKEPGAQCQGAVLKSVIWKNADISGGNF
CCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCC
RNANFEGANLEGTRFKGADLRGANLKSARLERSDLADANLEGADLRGANLRSASLTRAQL
CCCCCCCCCCCCCEECCCCCCCCCCHHHHCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
GSAKLSKAFLEGADLSSSRLIGADLTRAQLVGADLQLVDLRGAQLDGAFLNYSNLKQANL
CHHHHHHHHHCCCCCCCCEEECCCCHHHHHCCCCEEEEEECCCEECCEEECCCCCCCCCC
SGSSIQRFRIIGARLAEAIWIDGTVCSSTSVGSCE
CCCHHHHHHHHHHHHHHHEEECCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA