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The map label for this gene is yraN [C]

Identifier: 71906143

GI number: 71906143

Start: 563505

End: 563867

Strand: Reverse

Name: yraN [C]

Synonym: Daro_0503

Alternate gene names: 71906143

Gene position: 563867-563505 (Counterclockwise)

Preceding gene: 71906149

Following gene: 71906142

Centisome position: 12.53

GC content: 64.74

Gene sequence:

>363_bases
ATGCAGGTAAAGGCCAACGATACCACCACTGCGCGCGGCCGCGAAGCCGAGGACAGGGCGGCTCGCCATCTGGAGCGCGG
CGGCCTGCGCGTCGTCGAGCGCAATTTCCGCATCCGCGGCGGAGAAATCGACCTGATCTGCCGCGATGGCAAGGGGCTGG
TCTTCGTCGAGGTGCGCCAGCGCAGCCGCAGCGACTTCGGCGGGGCTGGGGCCAGCATCACGGCTGGCAAGCGCCGGCGC
ATCGTACTGGCGGCGCAGCACTACCTGCTCGGCAAGCCAGATTGCGACTGCCGATTCGATTGCGTCTTGATCGATGGCGA
ACAGTTGGAATGGATCAAGCATGCGTTTTCTGCTGACGATTAG

Upstream 100 bases:

>100_bases
GCGCAGGACTTCTTCAGCCCGACGAGTCAGATCGGCCAGATTTCCGAGCGGCGTCGGGACGACATACAATACGGCGGATT
CTTCCGTCATTTTTATCAGC

Downstream 100 bases:

>100_bases
CCTGCTCTGCTGGCTGGCGACAGCCCAGGCCGAGAGCATCCGGGTGCTGGTGCAAAATTCGCCACTGGCCGGTAGCCAGT
ACTACGCGGTTGGCGAGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MQVKANDTTTARGREAEDRAARHLERGGLRVVERNFRIRGGEIDLICRDGKGLVFVEVRQRSRSDFGGAGASITAGKRRR
IVLAAQHYLLGKPDCDCRFDCVLIDGEQLEWIKHAFSADD

Sequences:

>Translated_120_residues
MQVKANDTTTARGREAEDRAARHLERGGLRVVERNFRIRGGEIDLICRDGKGLVFVEVRQRSRSDFGGAGASITAGKRRR
IVLAAQHYLLGKPDCDCRFDCVLIDGEQLEWIKHAFSADD
>Mature_120_residues
MQVKANDTTTARGREAEDRAARHLERGGLRVVERNFRIRGGEIDLICRDGKGLVFVEVRQRSRSDFGGAGASITAGKRRR
IVLAAQHYLLGKPDCDCRFDCVLIDGEQLEWIKHAFSADD

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

Organism=Escherichia coli, GI1789538, Length=114, Percent_Identity=45.6140350877193, Blast_Score=91, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y503_DECAR (Q47IS1)

Other databases:

- EMBL:   CP000089
- RefSeq:   YP_283730.1
- ProteinModelPortal:   Q47IS1
- STRING:   Q47IS1
- GeneID:   3569977
- GenomeReviews:   CP000089_GR
- KEGG:   dar:Daro_0503
- eggNOG:   COG0792
- HOGENOM:   HBG710155
- OMA:   EVRQRKN
- ProtClustDB:   CLSK2525691
- BioCyc:   DARO159087:DARO_0503-MONOMER
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10
- TIGRFAMs:   TIGR00252

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 13442; Mature: 13442

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVKANDTTTARGREAEDRAARHLERGGLRVVERNFRIRGGEIDLICRDGKGLVFVEVRQ
CEECCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECEEEECCCEEEEEECCCCEEEEEEEC
RSRSDFGGAGASITAGKRRRIVLAAQHYLLGKPDCDCRFDCVLIDGEQLEWIKHAFSADD
CCCCCCCCCCCEEECCCCEEEEEEECEEECCCCCCCCEEEEEEECCCHHHHHHHHCCCCC
>Mature Secondary Structure
MQVKANDTTTARGREAEDRAARHLERGGLRVVERNFRIRGGEIDLICRDGKGLVFVEVRQ
CEECCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECEEEECCCEEEEEECCCCEEEEEEEC
RSRSDFGGAGASITAGKRRRIVLAAQHYLLGKPDCDCRFDCVLIDGEQLEWIKHAFSADD
CCCCCCCCCCCEEECCCCEEEEEEECEEECCCCCCCCEEEEEEECCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA