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The map label for this gene is ycgE [C]

Identifier: 71906127

GI number: 71906127

Start: 549879

End: 550784

Strand: Reverse

Name: ycgE [C]

Synonym: Daro_0487

Alternate gene names: 71906127

Gene position: 550784-549879 (Counterclockwise)

Preceding gene: 71906138

Following gene: 71906126

Centisome position: 12.24

GC content: 64.9

Gene sequence:

>906_bases
ATGAATACTCCTAGTTTCAACATCGCCGCCGTTGAGCGGGATACCGGGCTTTCCAAGGACGTCCTCCGCATGTGGGAGCG
GCGCTACGGATTTCCCGTGCCGGAACGCGACCTGAATGGCGAGCGTGTCTACCCGGCCGACCAGGTCGACCGCCTGCGTC
TGATCAAACGCCTGATGGATCAGGGACATCGCCCAGGCAAACTGATCGCGACACCGGCCGAGGAATTGACGGCACTCGCC
CCCCGCCGTGCCCGCGCCAGCGAAAGCATCCCGACCGGCGAAGGCGAGGACCTGACCGACCTGCTGGCACTGATCAAGCA
ACACGATGCCGCCGGCTATCAGCAGGCCATGCAGCAGCGACTCGCCCGCCAGGGTTTACAGCGTTTTGTCCAGGACACGG
TTTCTCCGCTGACCCACCAGGTCGGTGAAGCCTGGGAAGACGGCAGCTTCGAAGTGTTCGAGGAGCATCTGTTCACCGAA
CTGACCAAGCGCCTGCTCCGTCAGGCCATCGCCGCCCTGTCCGGCGGCCCGCGCCGACCGCGCGTGCTGCTGACCAGCGT
GCCGGATGAGACGCACATCCTCGGCCTGCTGATGGCGGAAGCCATGTTCGCGCTGGAGGGGGCCGAATGCATCCCGCTCG
GCACGCAAATGCCCTTGCTGGAGATTGGTCGCGCGGCCGAAGCACACCGCGCCGACATCGTCGCTCTGTCCTTTTCGACC
GCCTTCCCGCAACGACAAATTCCCGCCCTGTTGCAGCAACTGCGCATCGTTCTGCCGGACGGTATCGAGCTTTGGTGCGG
CGGCGGCGGCATCGCCCGGCTCGCCGCACAGGACGGCATCCGCCTGATTCCTTCGCTGGACAGAGCGATCGATGAACTGA
ACGAGTGGCGCACCACCCACGCTTGA

Upstream 100 bases:

>100_bases
CCTCGTTCGATTTGTCCTAGACAAACAGGACGTTTGTTCGTAAGATAGCCAGCAAAAGTTGGCTTGTCAACGGTTTGTCT
AACATTTGTTCAGGACAAAT

Downstream 100 bases:

>100_bases
AAACCGGATTGCGCAGCAACCAGGCCGAACAGCAAGAATGCTTAATTTGATGCTCGGCCAACAGGCACTAAAATAGACAC
TTACTCCATTCGTAAAGCAG

Product: regulatory protein, MerR

Products: NA

Alternate protein names: Transcriptional Regulator MerR Family; Regulatory Protein MerR; Transcriptional Regulator Merr Family; Transcriptional Regulator; MerR Family Regulatory Protein; MerR-Family Transcriptional Regulator; Transcriptional Repressor CarA; Transcriptional Regulator MerR Family Protein; Transcriptional Regulator CarH; Transcriptional Regulator Marr Family; Cobalamin

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MNTPSFNIAAVERDTGLSKDVLRMWERRYGFPVPERDLNGERVYPADQVDRLRLIKRLMDQGHRPGKLIATPAEELTALA
PRRARASESIPTGEGEDLTDLLALIKQHDAAGYQQAMQQRLARQGLQRFVQDTVSPLTHQVGEAWEDGSFEVFEEHLFTE
LTKRLLRQAIAALSGGPRRPRVLLTSVPDETHILGLLMAEAMFALEGAECIPLGTQMPLLEIGRAAEAHRADIVALSFST
AFPQRQIPALLQQLRIVLPDGIELWCGGGGIARLAAQDGIRLIPSLDRAIDELNEWRTTHA

Sequences:

>Translated_301_residues
MNTPSFNIAAVERDTGLSKDVLRMWERRYGFPVPERDLNGERVYPADQVDRLRLIKRLMDQGHRPGKLIATPAEELTALA
PRRARASESIPTGEGEDLTDLLALIKQHDAAGYQQAMQQRLARQGLQRFVQDTVSPLTHQVGEAWEDGSFEVFEEHLFTE
LTKRLLRQAIAALSGGPRRPRVLLTSVPDETHILGLLMAEAMFALEGAECIPLGTQMPLLEIGRAAEAHRADIVALSFST
AFPQRQIPALLQQLRIVLPDGIELWCGGGGIARLAAQDGIRLIPSLDRAIDELNEWRTTHA
>Mature_301_residues
MNTPSFNIAAVERDTGLSKDVLRMWERRYGFPVPERDLNGERVYPADQVDRLRLIKRLMDQGHRPGKLIATPAEELTALA
PRRARASESIPTGEGEDLTDLLALIKQHDAAGYQQAMQQRLARQGLQRFVQDTVSPLTHQVGEAWEDGSFEVFEEHLFTE
LTKRLLRQAIAALSGGPRRPRVLLTSVPDETHILGLLMAEAMFALEGAECIPLGTQMPLLEIGRAAEAHRADIVALSFST
AFPQRQIPALLQQLRIVLPDGIELWCGGGGIARLAAQDGIRLIPSLDRAIDELNEWRTTHA

Specific function: Unknown

COG id: COG5012

COG function: function code R; Predicted cobalamin binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33442; Mature: 33442

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTPSFNIAAVERDTGLSKDVLRMWERRYGFPVPERDLNGERVYPADQVDRLRLIKRLMD
CCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
QGHRPGKLIATPAEELTALAPRRARASESIPTGEGEDLTDLLALIKQHDAAGYQQAMQQR
CCCCCCCEEECCHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
LARQGLQRFVQDTVSPLTHQVGEAWEDGSFEVFEEHLFTELTKRLLRQAIAALSGGPRRP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RVLLTSVPDETHILGLLMAEAMFALEGAECIPLGTQMPLLEIGRAAEAHRADIVALSFST
EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHCHHHHHHHHEEEEECCC
AFPQRQIPALLQQLRIVLPDGIELWCGGGGIARLAAQDGIRLIPSLDRAIDELNEWRTTH
CCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
A
C
>Mature Secondary Structure
MNTPSFNIAAVERDTGLSKDVLRMWERRYGFPVPERDLNGERVYPADQVDRLRLIKRLMD
CCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
QGHRPGKLIATPAEELTALAPRRARASESIPTGEGEDLTDLLALIKQHDAAGYQQAMQQR
CCCCCCCEEECCHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
LARQGLQRFVQDTVSPLTHQVGEAWEDGSFEVFEEHLFTELTKRLLRQAIAALSGGPRRP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RVLLTSVPDETHILGLLMAEAMFALEGAECIPLGTQMPLLEIGRAAEAHRADIVALSFST
EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHCHHHHHHHHEEEEECCC
AFPQRQIPALLQQLRIVLPDGIELWCGGGGIARLAAQDGIRLIPSLDRAIDELNEWRTTH
CCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA