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The map label for this gene is ytfM [H]

Identifier: 71906102

GI number: 71906102

Start: 513130

End: 514809

Strand: Reverse

Name: ytfM [H]

Synonym: Daro_0462

Alternate gene names: 71906102

Gene position: 514809-513130 (Counterclockwise)

Preceding gene: 71906103

Following gene: 71906101

Centisome position: 11.44

GC content: 65.24

Gene sequence:

>1680_bases
GTGATCGCCCGCCGCCTGCCTCTCCTGTTGCTGCTCTGCCTGGCCCAACCCGTGGTTGCGGGTGAACTTGATCTGCAGGC
CCCCGATAACATCACCAAGCTGCTCGCGCCCTATCTGCCCGACGAGGCGGGCAGCCCGGGCAAACTGCAAGGCTTGCTCA
GCGAAATCCTCGCCACCGAGGGCTATTTCTCGCCGGTCTTCGAATTTGCCGAAAAGGGCGACGGGCTCAAGCTAACACTC
GACCCCGGCCTGCGAACCACGATCAACAGTCTCGATCTGCTGATCGATGGCCCGGTCGAGGCCGGCACCCGGAAAGCACT
GATCGACGACTGGGCCTTGCCGGTTGGCCAGCCCTTTCGCCAGGAGGGCTGGAACACGGCCAAGCAGCAGATCCTCTCCC
GCCTGCTCGCCGTCGAACACGCCGATGCCCGATTGCTCGACAGCGAGGCGAGCATCGACACCGAAGCCCACCGAGCCGAC
CTGCGCGCCCACTACGATGCCGGCCCACGCTACCGTTTCGGCCCGCTGCACGTCGAGGGGCTGCAAAATTATTCGCCCGA
ACTGATCGAGCGCTACAACCGTAGCGTGCAGCCCGGCCAGCCCTATCGCGAGGACAAGCTGAACGCCCTGCAGACGACGC
TGCAATCAACGCCCTACTTTGCCTCGGTGCAGACCATGCTCGACCGGGACGCCGTTGAGGTGCATGACGACGGCACGGCG
ACCGCCCCCATCCTGGTTCGCGTTCGCGAACGTTCGCCGCACCGCGTTTCCTTCGGCGCCGGCGCCAGTTCCAATACCGG
GGCCCGGGTCGAATTCAATTACCACACGCCCAATCTGTTCGCTCAGGCCTGGGAACTGGACAGCGGCCTGCGGCTGGAAC
AGAAGCGGCAGACCGCCTATGCCGACGTTTTTCTGCCGCCGGACGAGCGCAACCGCCGGCACAGCGTCGGCGTGATGGCC
GAAGCGACCGACATCCAGAACCTGAAGACCGAGCGTTATGCCTTTGGCGCCCAAACCATCCAGCAGCGCGGCAGCGTCGA
ACAACGCCTGTCGCTCAACTGGCAGAACGAAAAACGCGACCCGGACGGGGCATCGCCGGTGACCAGCCGAGCGCTGGTAC
CCAACGGCACGTGGACCTGGCGTCATGTCGACAGTCTGATCGAACCGCGGAACGGGACCGTGCTCCAGGGGCAGATCGGC
GGCGGTTCGAAAGCCGCCCTTTCCGACCAGAATTTCATCCGTTTCCATGCCCGCTTCCAGCATTACATCCCGCTCGGTCG
TGTCGATACGCTGACCCTACGCGGGGAAATCGGCTACACGCTGGCCGATTCGCGGCAACGCATCCCGCAGGACTACCTGT
TCCGCACCGGGGGTGCCAGCTCGGTGCGTGGCTACGCCTACCAGAGCCTGGGCATCAAGGAAGGCAACGCGACGGTTGGT
GGCCGCTACCTCGGTATCGCCAGCGCCGAAGTGACGCACTGGCTGGACGAGGCCTGGGGCATTGCCGCGTTTGTCGATGC
CGGCGATGCGGTCGATTCGCTGCAGGATATCCGTCTGGCGGTCGGCTACGGCCTCGGCGCCCGCTGGCGCAGCCCGGCCG
GGCCGATCGGCGTCGACCTGGCCTATGGCGAACGAACCCGCCAGGTCCAACTGCATTTCTCGCTGGCCATTCCGTTCTGA

Upstream 100 bases:

>100_bases
CGGGCCCTTGCTCAAGGCCATCTGGGTCCGACTTCGCCTCCAACCGCGCAGTTTCCTGCTGCCACCACGCCAAGCCAGCG
TCGACGCGTAAAATGACGGC

Downstream 100 bases:

>100_bases
CATGCTACGCCGTAAGCTCCTCCTCGCCAGTACCGTCATCCTGATCGCTTCCGCCACCTGGTTGACGACCAGCGAAAGCG
GCCTGCAAGCGACCACACGG

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 559; Mature: 559

Protein sequence:

>559_residues
MIARRLPLLLLLCLAQPVVAGELDLQAPDNITKLLAPYLPDEAGSPGKLQGLLSEILATEGYFSPVFEFAEKGDGLKLTL
DPGLRTTINSLDLLIDGPVEAGTRKALIDDWALPVGQPFRQEGWNTAKQQILSRLLAVEHADARLLDSEASIDTEAHRAD
LRAHYDAGPRYRFGPLHVEGLQNYSPELIERYNRSVQPGQPYREDKLNALQTTLQSTPYFASVQTMLDRDAVEVHDDGTA
TAPILVRVRERSPHRVSFGAGASSNTGARVEFNYHTPNLFAQAWELDSGLRLEQKRQTAYADVFLPPDERNRRHSVGVMA
EATDIQNLKTERYAFGAQTIQQRGSVEQRLSLNWQNEKRDPDGASPVTSRALVPNGTWTWRHVDSLIEPRNGTVLQGQIG
GGSKAALSDQNFIRFHARFQHYIPLGRVDTLTLRGEIGYTLADSRQRIPQDYLFRTGGASSVRGYAYQSLGIKEGNATVG
GRYLGIASAEVTHWLDEAWGIAAFVDAGDAVDSLQDIRLAVGYGLGARWRSPAGPIGVDLAYGERTRQVQLHFSLAIPF

Sequences:

>Translated_559_residues
MIARRLPLLLLLCLAQPVVAGELDLQAPDNITKLLAPYLPDEAGSPGKLQGLLSEILATEGYFSPVFEFAEKGDGLKLTL
DPGLRTTINSLDLLIDGPVEAGTRKALIDDWALPVGQPFRQEGWNTAKQQILSRLLAVEHADARLLDSEASIDTEAHRAD
LRAHYDAGPRYRFGPLHVEGLQNYSPELIERYNRSVQPGQPYREDKLNALQTTLQSTPYFASVQTMLDRDAVEVHDDGTA
TAPILVRVRERSPHRVSFGAGASSNTGARVEFNYHTPNLFAQAWELDSGLRLEQKRQTAYADVFLPPDERNRRHSVGVMA
EATDIQNLKTERYAFGAQTIQQRGSVEQRLSLNWQNEKRDPDGASPVTSRALVPNGTWTWRHVDSLIEPRNGTVLQGQIG
GGSKAALSDQNFIRFHARFQHYIPLGRVDTLTLRGEIGYTLADSRQRIPQDYLFRTGGASSVRGYAYQSLGIKEGNATVG
GRYLGIASAEVTHWLDEAWGIAAFVDAGDAVDSLQDIRLAVGYGLGARWRSPAGPIGVDLAYGERTRQVQLHFSLAIPF
>Mature_559_residues
MIARRLPLLLLLCLAQPVVAGELDLQAPDNITKLLAPYLPDEAGSPGKLQGLLSEILATEGYFSPVFEFAEKGDGLKLTL
DPGLRTTINSLDLLIDGPVEAGTRKALIDDWALPVGQPFRQEGWNTAKQQILSRLLAVEHADARLLDSEASIDTEAHRAD
LRAHYDAGPRYRFGPLHVEGLQNYSPELIERYNRSVQPGQPYREDKLNALQTTLQSTPYFASVQTMLDRDAVEVHDDGTA
TAPILVRVRERSPHRVSFGAGASSNTGARVEFNYHTPNLFAQAWELDSGLRLEQKRQTAYADVFLPPDERNRRHSVGVMA
EATDIQNLKTERYAFGAQTIQQRGSVEQRLSLNWQNEKRDPDGASPVTSRALVPNGTWTWRHVDSLIEPRNGTVLQGQIG
GGSKAALSDQNFIRFHARFQHYIPLGRVDTLTLRGEIGYTLADSRQRIPQDYLFRTGGASSVRGYAYQSLGIKEGNATVG
GRYLGIASAEVTHWLDEAWGIAAFVDAGDAVDSLQDIRLAVGYGLGARWRSPAGPIGVDLAYGERTRQVQLHFSLAIPF

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=563, Percent_Identity=24.5115452930728, Blast_Score=127, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 61711; Mature: 61711

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIARRLPLLLLLCLAQPVVAGELDLQAPDNITKLLAPYLPDEAGSPGKLQGLLSEILATE
CCCHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
GYFSPVFEFAEKGDGLKLTLDPGLRTTINSLDLLIDGPVEAGTRKALIDDWALPVGQPFR
CCHHHHHHHHHCCCCEEEEECCCCHHHHCCEEEEEECCCCCCCCHHHHHHCCCCCCCCHH
QEGWNTAKQQILSRLLAVEHADARLLDSEASIDTEAHRADLRAHYDAGPRYRFGPLHVEG
HHCCCHHHHHHHHHHHHHHCCCHHEECCCCCCCCHHHHHHHHEECCCCCCEECCCEECCC
LQNYSPELIERYNRSVQPGQPYREDKLNALQTTLQSTPYFASVQTMLDRDAVEVHDDGTA
CCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCC
TAPILVRVRERSPHRVSFGAGASSNTGARVEFNYHTPNLFAQAWELDSGLRLEQKRQTAY
CCEEEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCHHHHHCCEE
ADVFLPPDERNRRHSVGVMAEATDIQNLKTERYAFGAQTIQQRGSVEQRLSLNWQNEKRD
EEEEECCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCC
PDGASPVTSRALVPNGTWTWRHVDSLIEPRNGTVLQGQIGGGSKAALSDQNFIRFHARFQ
CCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEEEEHHH
HYIPLGRVDTLTLRGEIGYTLADSRQRIPQDYLFRTGGASSVRGYAYQSLGIKEGNATVG
HCCCCCCEEEEEEECCCCEEECCHHHHCCHHHHEECCCCCCCCCEEEHCCCCCCCCCCCC
GRYLGIASAEVTHWLDEAWGIAAFVDAGDAVDSLQDIRLAVGYGLGARWRSPAGPIGVDL
CEEEEEEHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
AYGERTRQVQLHFSLAIPF
ECCCCCEEEEEEEEEECCC
>Mature Secondary Structure
MIARRLPLLLLLCLAQPVVAGELDLQAPDNITKLLAPYLPDEAGSPGKLQGLLSEILATE
CCCHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
GYFSPVFEFAEKGDGLKLTLDPGLRTTINSLDLLIDGPVEAGTRKALIDDWALPVGQPFR
CCHHHHHHHHHCCCCEEEEECCCCHHHHCCEEEEEECCCCCCCCHHHHHHCCCCCCCCHH
QEGWNTAKQQILSRLLAVEHADARLLDSEASIDTEAHRADLRAHYDAGPRYRFGPLHVEG
HHCCCHHHHHHHHHHHHHHCCCHHEECCCCCCCCHHHHHHHHEECCCCCCEECCCEECCC
LQNYSPELIERYNRSVQPGQPYREDKLNALQTTLQSTPYFASVQTMLDRDAVEVHDDGTA
CCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCC
TAPILVRVRERSPHRVSFGAGASSNTGARVEFNYHTPNLFAQAWELDSGLRLEQKRQTAY
CCEEEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCHHHHHCCEE
ADVFLPPDERNRRHSVGVMAEATDIQNLKTERYAFGAQTIQQRGSVEQRLSLNWQNEKRD
EEEEECCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCC
PDGASPVTSRALVPNGTWTWRHVDSLIEPRNGTVLQGQIGGGSKAALSDQNFIRFHARFQ
CCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEEEEHHH
HYIPLGRVDTLTLRGEIGYTLADSRQRIPQDYLFRTGGASSVRGYAYQSLGIKEGNATVG
HCCCCCCEEEEEEECCCCEEECCHHHHCCHHHHEECCCCCCCCCEEEHCCCCCCCCCCCC
GRYLGIASAEVTHWLDEAWGIAAFVDAGDAVDSLQDIRLAVGYGLGARWRSPAGPIGVDL
CEEEEEEHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
AYGERTRQVQLHFSLAIPF
ECCCCCEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]