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The map label for this gene is gylR [H]

Identifier: 71906026

GI number: 71906026

Start: 416303

End: 417100

Strand: Reverse

Name: gylR [H]

Synonym: Daro_0384

Alternate gene names: 71906026

Gene position: 417100-416303 (Counterclockwise)

Preceding gene: 71906028

Following gene: 71906011

Centisome position: 9.27

GC content: 64.66

Gene sequence:

>798_bases
ATGAGTGAGGAACTGGAAGGGAAACACGGCGTTCAGTCGCTGGAAGTGGGCATGAGTATCCTGCGTGCCATGGCCAACGG
CCAGCGTTCGATGATGCTGAAGGATATTGCTGCGGCGGCCGACATGCCCGCCTCCAAGGCGCACCGTTATCTGGTCAGCC
TGATCCGGGCCGGCCTGGTCGACCAGGACCCGATGACCTCGCGTTACGATCTCGGCACCTTCGCGCTCAATCTCGGCCTC
GTCGCGCTTGACCGACTGGACCGCGTCCGCCTCGGCCTGAGCGCCATTGCCGAATTGCGTGACGAAATCAACCAGACCAC
GGCCCTCGCGGTCTGGGGGGATGGTGGCCCGGTGGTGATCCGCTGGGAACGGCCGCGTCGGCCGATCACCGTCAACGTGA
CGACCGGTACCGCGCTCGATCTGCTGATGTCGGCCGCCGGGCGGGTTTTTGCCGCCTGGATGCCGAAGAAAATCACTGCG
CCCCTGCTGGCCGAGGAGTTGAAGCACGCCCCGCTGCCGCCCGACTTGAAGAGCAAGGCGGCAGTCGAGGCGCTGCTGGC
CGAGATTCGGGCGCAAGGCTATGCCGCGACCAATGGCCAGCACAAGGTGGCTGGCGTCGAAGCCGCTGCCGCGCCGATAT
TCAATTTCAAGAACGAAATCACGATGGCAGTCCTGGTCGTCGGCGTCCAAGGCATGCTCGACACCAGCCCGGAGGGCAAC
GTGATCCAGAGCCTGAAGCATTGCGCCGAAACACTTTCCCAGCGCCTCGGCGCCCACGGCGAACCGAAGCAGCCCTGA

Upstream 100 bases:

>100_bases
AATGGAATAAACGCGAAGTTTTGACATAATACAATGTTTTCCTTTGATATTTTGATTTATTATAAAACTAGTTTTGAATA
ACAGAATTCAGGGAGCAGCA

Downstream 100 bases:

>100_bases
GGCACGTTCATTCCCGTGGTAACGGGAATGAACAGCCGGCTTACAACCAGGCGGGCGGACGCTTGTCGAGGAAAGCGGCA
ATACCGTCTTTCGCTTCATC

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MSEELEGKHGVQSLEVGMSILRAMANGQRSMMLKDIAAAADMPASKAHRYLVSLIRAGLVDQDPMTSRYDLGTFALNLGL
VALDRLDRVRLGLSAIAELRDEINQTTALAVWGDGGPVVIRWERPRRPITVNVTTGTALDLLMSAAGRVFAAWMPKKITA
PLLAEELKHAPLPPDLKSKAAVEALLAEIRAQGYAATNGQHKVAGVEAAAAPIFNFKNEITMAVLVVGVQGMLDTSPEGN
VIQSLKHCAETLSQRLGAHGEPKQP

Sequences:

>Translated_265_residues
MSEELEGKHGVQSLEVGMSILRAMANGQRSMMLKDIAAAADMPASKAHRYLVSLIRAGLVDQDPMTSRYDLGTFALNLGL
VALDRLDRVRLGLSAIAELRDEINQTTALAVWGDGGPVVIRWERPRRPITVNVTTGTALDLLMSAAGRVFAAWMPKKITA
PLLAEELKHAPLPPDLKSKAAVEALLAEIRAQGYAATNGQHKVAGVEAAAAPIFNFKNEITMAVLVVGVQGMLDTSPEGN
VIQSLKHCAETLSQRLGAHGEPKQP
>Mature_264_residues
SEELEGKHGVQSLEVGMSILRAMANGQRSMMLKDIAAAADMPASKAHRYLVSLIRAGLVDQDPMTSRYDLGTFALNLGLV
ALDRLDRVRLGLSAIAELRDEINQTTALAVWGDGGPVVIRWERPRRPITVNVTTGTALDLLMSAAGRVFAAWMPKKITAP
LLAEELKHAPLPPDLKSKAAVEALLAEIRAQGYAATNGQHKVAGVEAAAAPIFNFKNEITMAVLVVGVQGMLDTSPEGNV
IQSLKHCAETLSQRLGAHGEPKQP

Specific function: May be an activator protein for the gylABX operon [H]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=247, Percent_Identity=24.6963562753036, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788581, Length=216, Percent_Identity=26.3888888888889, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082359, Length=220, Percent_Identity=25.9090909090909, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789999, Length=260, Percent_Identity=24.2307692307692, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28369; Mature: 28238

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEELEGKHGVQSLEVGMSILRAMANGQRSMMLKDIAAAADMPASKAHRYLVSLIRAGLV
CCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
DQDPMTSRYDLGTFALNLGLVALDRLDRVRLGLSAIAELRDEINQTTALAVWGDGGPVVI
CCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEE
RWERPRRPITVNVTTGTALDLLMSAAGRVFAAWMPKKITAPLLAEELKHAPLPPDLKSKA
EEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHH
AVEALLAEIRAQGYAATNGQHKVAGVEAAAAPIFNFKNEITMAVLVVGVQGMLDTSPEGN
HHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCH
VIQSLKHCAETLSQRLGAHGEPKQP
HHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SEELEGKHGVQSLEVGMSILRAMANGQRSMMLKDIAAAADMPASKAHRYLVSLIRAGLV
CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
DQDPMTSRYDLGTFALNLGLVALDRLDRVRLGLSAIAELRDEINQTTALAVWGDGGPVVI
CCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEE
RWERPRRPITVNVTTGTALDLLMSAAGRVFAAWMPKKITAPLLAEELKHAPLPPDLKSKA
EEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHH
AVEALLAEIRAQGYAATNGQHKVAGVEAAAAPIFNFKNEITMAVLVVGVQGMLDTSPEGN
HHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCH
VIQSLKHCAETLSQRLGAHGEPKQP
HHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3225846; 12000953 [H]