Click here to switch to the map view.

The map label for this gene is rnpA

Identifier: 71894023

GI number: 71894023

Start: 896906

End: 897244

Strand: Reverse

Name: rnpA

Synonym: MHJ_0675

Alternate gene names: 71894023

Gene position: 897244-896906 (Counterclockwise)

Preceding gene: 71894024

Following gene: 71894022

Centisome position: 99.98

GC content: 24.48

Gene sequence:

>339_bases
TTGCAAAAAATTCGTAGTATTAAAAAAAATTGGGAATTTCAAGCAATAATTAACAAAAAAAATCAAATTGTCACTAATTA
TCTTATATTTTATTATGTGAAAAGTGATTTTTTTGAGATTGGGATTTCAGTACCAAAAAAGTTTGCAAACGCAGTCAAAC
GTAATTACTATAAGAGACAAATTAAAAATGCGCTTTATATATTGTGGAAAAAAGGGGAGATTTTTTTAAATTTTCGTGTA
GTTTTAATTGCGAGAAAGAATTTTTTACCCCTAAGCTTTGAAACCAAATACCAAAAATTAGCTAAAATTTTTAAAGAATT
AAAGAGAAATGAAAAATAG

Upstream 100 bases:

>100_bases
GAATGTCAACAGCCGACGGGCGAAAAATTCTTGCTGCACGACGCGCAAAAGGTCGGAAAAGACTAACTGTTTCTGATAAA
TAATTTTTGTTGAGATAGTT

Downstream 100 bases:

>100_bases
AAAAATCCGACCTAAAGCTTTTGATTATTTCCAAAGTCAAAATAATCAAAATAAAAAAACCTTTAAATTTAAAGGTTTTT
TTAAGTTCTTAAAGATTTTT

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MQKIRSIKKNWEFQAIINKKNQIVTNYLIFYYVKSDFFEIGISVPKKFANAVKRNYYKRQIKNALYILWKKGEIFLNFRV
VLIARKNFLPLSFETKYQKLAKIFKELKRNEK

Sequences:

>Translated_112_residues
MQKIRSIKKNWEFQAIINKKNQIVTNYLIFYYVKSDFFEIGISVPKKFANAVKRNYYKRQIKNALYILWKKGEIFLNFRV
VLIARKNFLPLSFETKYQKLAKIFKELKRNEK
>Mature_112_residues
MQKIRSIKKNWEFQAIINKKNQIVTNYLIFYYVKSDFFEIGISVPKKFANAVKRNYYKRQIKNALYILWKKGEIFLNFRV
VLIARKNFLPLSFETKYQKLAKIFKELKRNEK

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_MYCH7 (Q4A750)

Other databases:

- EMBL:   AE017244
- RefSeq:   YP_288062.1
- ProteinModelPortal:   Q4A750
- SMR:   Q4A750
- STRING:   Q4A750
- GeneID:   3570930
- GenomeReviews:   AE017244_GR
- KEGG:   mhp:MHP7448_0677
- eggNOG:   COG0594
- HOGENOM:   HBG728160
- OMA:   SIPKKFA
- ProtClustDB:   CLSK799441
- BioCyc:   MHYO262722:MHP7448_0677-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 13678; Mature: 13678

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKIRSIKKNWEFQAIINKKNQIVTNYLIFYYVKSDFFEIGISVPKKFANAVKRNYYKRQ
CCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
IKNALYILWKKGEIFLNFRVVLIARKNFLPLSFETKYQKLAKIFKELKRNEK
HHHHHEEEEECCEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQKIRSIKKNWEFQAIINKKNQIVTNYLIFYYVKSDFFEIGISVPKKFANAVKRNYYKRQ
CCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
IKNALYILWKKGEIFLNFRVVLIARKNFLPLSFETKYQKLAKIFKELKRNEK
HHHHHEEEEECCEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA