| Definition | Mycoplasma hyopneumoniae J chromosome, complete genome. |
|---|---|
| Accession | NC_007295 |
| Length | 897,405 |
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The map label for this gene is 71893962
Identifier: 71893962
GI number: 71893962
Start: 793881
End: 796259
Strand: Reverse
Name: 71893962
Synonym: MHJ_0613
Alternate gene names: NA
Gene position: 796259-793881 (Counterclockwise)
Preceding gene: 71893963
Following gene: 71893939
Centisome position: 88.73
GC content: 32.62
Gene sequence:
>2379_bases ATATCTTGATCTTGTTCTAAACAAACAAGCAAGGAAAATCTATCAACAACAAACCAGAAAACAAATCCAAAGACAGATCA AAAAGATATTGAAAAAATTAGAGATGAACTAAAAGCGCGACTAAATTCCGAATACCAAAATTTTGAAAACTTGCCTTCTA AGCAAGCTTATCATAATTTTGGTAAAAAACTTGATGAAATTAGAGCTGATCTTGAAAAATTATTCAAAAATCCTGATCTT GAAAACAAACAGAGAGACTGGGATAATACAAAAAAATCTTTAGATTATCAACTTGAAAAACAAAATTATCAAATTGATCA TTTAACAAAGTTAATTATTGGTTCTTTTAATGATATTTTAAAACCTATTGAGAAAAAACAGGAGGTACCTGAGCAACCAA AACAAGAAATTCCAGCTGATAAAGTTAATCAATATTATGAAAAATTAAAGGAAATTACACCTAAAGGCCAAAATTGAGCG ATTATCAAAGACGGCAAACGAATTGTTGCTGATCAATATAAATATGATTTCCCCGATCATGAATATAAGTATTTTATTCA AAAATTTGGCGGCGGCCCGGCTAGAATCGTCGGTCTTGAAAACCCAGATGGCTTAGTTGAATACCCTTATGGAAAAACAA AAAAATTACCCGAAAATCTAAAATCACAACTTAATCAAGAAGCTAAAAAGGCCGGCCAACCTTTATATGATAATGCCGCT TATCGAACTTTTGTTGTCCCAAAATTTGATTCTTCTGGTAAAATTACTAGTATCGAGATTCCAGAACATCAAAAAGGAGA TACATCCCCGGCACTTCATGTCGATGAGGCAACTGGCCAACTACTAAGAGGTGGACCTGGAAGAGTCGGCCTTCCCCGGA TTTTACCAAATCAAGAATATAAAAATTTAACAAAAAATTCAATTGGTGTTGAAATTGTCAATGGAGATTTTCTAAAATTT CGTCCTGATGGCGGCCAAGGTGAACCTGAATATTTAGATCCAAAAGAAATTGTCCATTTTTCTAAAGGTTTCCATGGGAC AATGAATATTCTCGATTACAAAAAAGAGGATGGCCAAAAATATCCGCTTACTTGATATTTTATCACAAATGCTCATGTTT TAAACCGACTTTTAGTCGCAAATGACTATCATCCTGATTCAATTTATGGCCGTGATGAAGATGCTTATAATTCTTATAAT CGACAATATAATACTTGATCGCTTGTACTAACCAAGATAAAAAATGATGTTGACCTCAATAATATAATGCCAACAACTGG TGAAAGTCGTCGCGATGCTTATTATGATACTATAAGAATTTCGGTGCGAACAAAATCAAGTAATCTTCATAATGCCGGAA AACAATTAGATCAAAGTAATAACTACCAAATCTATAGTGATAAACTAAATAATAATCAAGAAGTACCAAAAAATGCTGAA CTTAACGTAAAAACAGTGGTTTTTGGGACTAATGTATTCGAAAAAAAACCTGGGGACTTCACTGAGCAAGAAAAATATAA AAATATGGAAGAAATACTTGATTTTGCAATTATGGAACTAACTTTTGATAATGAAGATCAAGCAAAACTGATAACAGGGG ATTGATATAAGGAGCACCAAGATGCAAAAAATAATCAAAAACAAAGCACAATTATCTCGGATACTAACCTTTTAAATGAA CAAGAATATGAAAAATTAGCTCCAAATCAGTTTTACGGTCTCGGATTTCCAGTCTCAGAAGGCGAACTTAATTCAACTTT AAACGAATATCAAAATAAACAAGCCTGAGATACGCGAAAATATAGCCTTTCACCCCATGTTAACAAGGATCATGAACTTT ATTTTAACAGGGATTTATCAAATCCCAAACTTAAAGATGGCGGCGATCTTTCTTGGTCAAGATCTTATCGATCTTTTATA AATAAGCCCGGACTAACAGATCTTTTTATCTCAAACGCTTATGTTTCTTCAGGTTTTATCAAGGTAACTAAATACGATCA GCACTCGCGAACTTTCAAGGAAACCCCTTATTTATTTTGAGGTTTAGGAACCTTGCTGGATAATTTTACCGCAGGAGCCG GTATGTCAGGAACTGGTGTTTATAAAGATGATAAACTTTATTCACTTGTTTTTGCAAACGACAGACTTGCTTCAACTGCT TTAACTTTAAATTTAAGATCATATGGATATGATTATAATGGTTACTATGGTAAATATTCTTTACCAAAATACGACCTAAT TTATGGTTCAAAGCATCAAAGAAAATCTTACTTCCAAGCGATGCAACAACTTTATAAAGGGAAAAATATAAAAACTTATT TATTTCCTAATGGTTTTGGCGATATCAACAAAGTTGATGTTTTTGGCGACTGAAAATAA
Upstream 100 bases:
>100_bases TTTAAATTTTTTGGGGTAAATTATGCAAAAAAAATACTTTTCTATGAAAAACAAGCAGTTTTTCTTACTTTTTGGGCTTG TTTTTACTACTTTTTCACTA
Downstream 100 bases:
>100_bases TCTAATAATATCAAAATGTCTTTGAATTTATGTGATAATTTTTATTTTTTGCCTTATAAGTATTTTTAACTTTTTAAAAT AAATTTTAAATTTCTAGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein LppD Family; Membrane Lipoprotein; Prolipoprotein
Number of amino acids: Translated: 792; Mature: 791
Protein sequence:
>792_residues MSWSCSKQTSKENLSTTNQKTNPKTDQKDIEKIRDELKARLNSEYQNFENLPSKQAYHNFGKKLDEIRADLEKLFKNPDL ENKQRDWDNTKKSLDYQLEKQNYQIDHLTKLIIGSFNDILKPIEKKQEVPEQPKQEIPADKVNQYYEKLKEITPKGQNWA IIKDGKRIVADQYKYDFPDHEYKYFIQKFGGGPARIVGLENPDGLVEYPYGKTKKLPENLKSQLNQEAKKAGQPLYDNAA YRTFVVPKFDSSGKITSIEIPEHQKGDTSPALHVDEATGQLLRGGPGRVGLPRILPNQEYKNLTKNSIGVEIVNGDFLKF RPDGGQGEPEYLDPKEIVHFSKGFHGTMNILDYKKEDGQKYPLTWYFITNAHVLNRLLVANDYHPDSIYGRDEDAYNSYN RQYNTWSLVLTKIKNDVDLNNIMPTTGESRRDAYYDTIRISVRTKSSNLHNAGKQLDQSNNYQIYSDKLNNNQEVPKNAE LNVKTVVFGTNVFEKKPGDFTEQEKYKNMEEILDFAIMELTFDNEDQAKLITGDWYKEHQDAKNNQKQSTIISDTNLLNE QEYEKLAPNQFYGLGFPVSEGELNSTLNEYQNKQAWDTRKYSLSPHVNKDHELYFNRDLSNPKLKDGGDLSWSRSYRSFI NKPGLTDLFISNAYVSSGFIKVTKYDQHSRTFKETPYLFWGLGTLLDNFTAGAGMSGTGVYKDDKLYSLVFANDRLASTA LTLNLRSYGYDYNGYYGKYSLPKYDLIYGSKHQRKSYFQAMQQLYKGKNIKTYLFPNGFGDINKVDVFGDWK
Sequences:
>Translated_792_residues MS*SCSKQTSKENLSTTNQKTNPKTDQKDIEKIRDELKARLNSEYQNFENLPSKQAYHNFGKKLDEIRADLEKLFKNPDL ENKQRDWDNTKKSLDYQLEKQNYQIDHLTKLIIGSFNDILKPIEKKQEVPEQPKQEIPADKVNQYYEKLKEITPKGQN*A IIKDGKRIVADQYKYDFPDHEYKYFIQKFGGGPARIVGLENPDGLVEYPYGKTKKLPENLKSQLNQEAKKAGQPLYDNAA YRTFVVPKFDSSGKITSIEIPEHQKGDTSPALHVDEATGQLLRGGPGRVGLPRILPNQEYKNLTKNSIGVEIVNGDFLKF RPDGGQGEPEYLDPKEIVHFSKGFHGTMNILDYKKEDGQKYPLT*YFITNAHVLNRLLVANDYHPDSIYGRDEDAYNSYN RQYNT*SLVLTKIKNDVDLNNIMPTTGESRRDAYYDTIRISVRTKSSNLHNAGKQLDQSNNYQIYSDKLNNNQEVPKNAE LNVKTVVFGTNVFEKKPGDFTEQEKYKNMEEILDFAIMELTFDNEDQAKLITGD*YKEHQDAKNNQKQSTIISDTNLLNE QEYEKLAPNQFYGLGFPVSEGELNSTLNEYQNKQA*DTRKYSLSPHVNKDHELYFNRDLSNPKLKDGGDLSWSRSYRSFI NKPGLTDLFISNAYVSSGFIKVTKYDQHSRTFKETPYLF*GLGTLLDNFTAGAGMSGTGVYKDDKLYSLVFANDRLASTA LTLNLRSYGYDYNGYYGKYSLPKYDLIYGSKHQRKSYFQAMQQLYKGKNIKTYLFPNGFGDINKVDVFGD*K >Mature_791_residues S*SCSKQTSKENLSTTNQKTNPKTDQKDIEKIRDELKARLNSEYQNFENLPSKQAYHNFGKKLDEIRADLEKLFKNPDLE NKQRDWDNTKKSLDYQLEKQNYQIDHLTKLIIGSFNDILKPIEKKQEVPEQPKQEIPADKVNQYYEKLKEITPKGQN*AI IKDGKRIVADQYKYDFPDHEYKYFIQKFGGGPARIVGLENPDGLVEYPYGKTKKLPENLKSQLNQEAKKAGQPLYDNAAY RTFVVPKFDSSGKITSIEIPEHQKGDTSPALHVDEATGQLLRGGPGRVGLPRILPNQEYKNLTKNSIGVEIVNGDFLKFR PDGGQGEPEYLDPKEIVHFSKGFHGTMNILDYKKEDGQKYPLT*YFITNAHVLNRLLVANDYHPDSIYGRDEDAYNSYNR QYNT*SLVLTKIKNDVDLNNIMPTTGESRRDAYYDTIRISVRTKSSNLHNAGKQLDQSNNYQIYSDKLNNNQEVPKNAEL NVKTVVFGTNVFEKKPGDFTEQEKYKNMEEILDFAIMELTFDNEDQAKLITGD*YKEHQDAKNNQKQSTIISDTNLLNEQ EYEKLAPNQFYGLGFPVSEGELNSTLNEYQNKQA*DTRKYSLSPHVNKDHELYFNRDLSNPKLKDGGDLSWSRSYRSFIN KPGLTDLFISNAYVSSGFIKVTKYDQHSRTFKETPYLF*GLGTLLDNFTAGAGMSGTGVYKDDKLYSLVFANDRLASTAL TLNLRSYGYDYNGYYGKYSLPKYDLIYGSKHQRKSYFQAMQQLYKGKNIKTYLFPNGFGDINKVDVFGD*K
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89893; Mature: 89762
Theoretical pI: Translated: 8.15; Mature: 8.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSCSKQTSKENLSTTNQKTNPKTDQKDIEKIRDELKARLNSEYQNFENLPSKQAYHNFG CCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH KKLDEIRADLEKLFKNPDLENKQRDWDNTKKSLDYQLEKQNYQIDHLTKLIIGSFNDILK HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHH PIEKKQEVPEQPKQEIPADKVNQYYEKLKEITPKGQNAIIKDGKRIVADQYKYDFPDHEY HHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEHHHHCCCCCCHHH KYFIQKFGGGPARIVGLENPDGLVEYPYGKTKKLPENLKSQLNQEAKKAGQPLYDNAAYR HHHHHHHCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEE TFVVPKFDSSGKITSIEIPEHQKGDTSPALHVDEATGQLLRGGPGRVGLPRILPNQEYKN EEEEECCCCCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHCCCCCCCCCCCCCCCHHHHH LTKNSIGVEIVNGDFLKFRPDGGQGEPEYLDPKEIVHFSKGFHGTMNILDYKKEDGQKYP HHCCCCCEEEECCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCHHEEECCCCCCCCC LTYFITNAHVLNRLLVANDYHPDSIYGRDEDAYNSYNRQYNTSLVLTKIKNDVDLNNIMP EEEEEECHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCCCC TTGESRRDAYYDTIRISVRTKSSNLHNAGKQLDQSNNYQIYSDKLNNNQEVPKNAELNVK CCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEE TVVFGTNVFEKKPGDFTEQEKYKNMEEILDFAIMELTFDNEDQAKLITGDYKEHQDAKNN EEEEECCHHCCCCCCCCHHHHHCCHHHHHHHHHHEEEECCCCCCEEEECCCHHHHHHHCC QKQSTIISDTNLLNEQEYEKLAPNQFYGLGFPVSEGELNSTLNEYQNKQADTRKYSLSPH CHHHEEECCHHHCCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCEEECCCC VNKDHELYFNRDLSNPKLKDGGDLSWSRSYRSFINKPGLTDLFISNAYVSSGFIKVTKYD CCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHEEECCEECCCEEEEEECC QHSRTFKETPYLFGLGTLLDNFTAGAGMSGTGVYKDDKLYSLVFANDRLASTALTLNLRS CCCCHHHCCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEHHH YGYDYNGYYGKYSLPKYDLIYGSKHQRKSYFQAMQQLYKGKNIKTYLFPNGFGDINKVDV CCCCCCCEECCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEC FGDK CCCC >Mature Secondary Structure SSCSKQTSKENLSTTNQKTNPKTDQKDIEKIRDELKARLNSEYQNFENLPSKQAYHNFG CCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH KKLDEIRADLEKLFKNPDLENKQRDWDNTKKSLDYQLEKQNYQIDHLTKLIIGSFNDILK HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHH PIEKKQEVPEQPKQEIPADKVNQYYEKLKEITPKGQNAIIKDGKRIVADQYKYDFPDHEY HHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEHHHHCCCCCCHHH KYFIQKFGGGPARIVGLENPDGLVEYPYGKTKKLPENLKSQLNQEAKKAGQPLYDNAAYR HHHHHHHCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEE TFVVPKFDSSGKITSIEIPEHQKGDTSPALHVDEATGQLLRGGPGRVGLPRILPNQEYKN EEEEECCCCCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHCCCCCCCCCCCCCCCHHHHH LTKNSIGVEIVNGDFLKFRPDGGQGEPEYLDPKEIVHFSKGFHGTMNILDYKKEDGQKYP HHCCCCCEEEECCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCHHEEECCCCCCCCC LTYFITNAHVLNRLLVANDYHPDSIYGRDEDAYNSYNRQYNTSLVLTKIKNDVDLNNIMP EEEEEECHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCCCC TTGESRRDAYYDTIRISVRTKSSNLHNAGKQLDQSNNYQIYSDKLNNNQEVPKNAELNVK CCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEE TVVFGTNVFEKKPGDFTEQEKYKNMEEILDFAIMELTFDNEDQAKLITGDYKEHQDAKNN EEEEECCHHCCCCCCCCHHHHHCCHHHHHHHHHHEEEECCCCCCEEEECCCHHHHHHHCC QKQSTIISDTNLLNEQEYEKLAPNQFYGLGFPVSEGELNSTLNEYQNKQADTRKYSLSPH CHHHEEECCHHHCCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCEEECCCC VNKDHELYFNRDLSNPKLKDGGDLSWSRSYRSFINKPGLTDLFISNAYVSSGFIKVTKYD CCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHEEECCEECCCEEEEEECC QHSRTFKETPYLFGLGTLLDNFTAGAGMSGTGVYKDDKLYSLVFANDRLASTALTLNLRS CCCCHHHCCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEHHH YGYDYNGYYGKYSLPKYDLIYGSKHQRKSYFQAMQQLYKGKNIKTYLFPNGFGDINKVDV CCCCCCCEECCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEC FGDK CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA