| Definition | Mycoplasma hyopneumoniae J chromosome, complete genome. |
|---|---|
| Accession | NC_007295 |
| Length | 897,405 |
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The map label for this gene is uvrA [H]
Identifier: 71893447
GI number: 71893447
Start: 111446
End: 114259
Strand: Reverse
Name: uvrA [H]
Synonym: MHJ_0088
Alternate gene names: 71893447
Gene position: 114259-111446 (Counterclockwise)
Preceding gene: 71893448
Following gene: 71893444
Centisome position: 12.73
GC content: 33.01
Gene sequence:
>2814_bases ATCTACATTAAAGGCGCACGCGAAAACAATTTAAAAAATATTAATCTTGTTCTTCCAAAAAATAAACTAATAGTTTTTAC GGGACTTTCAGGTTCTGGTAAATCTTCGCTCGCTTTTAACACTATTTATGAGGAGGGAAAGCGCCGCTATATTGATTCTT TAAGTTCGTATGCTCGGCAATTTTTAGGTGGGACAAAAAAGCCAAAAGTTGATGCAATTTATGGGCTTTTACCCACAATT TCAGTCGAACAGAAAACAAGTCATAACAATCCGCGTTCAACAGTTGGTACAATTACGGAAATTTATGACTATTTTCGGCT TTTATATGCAAAAATTGGGAAAGCATTCTGCCCAAACCACAAAGTTGAAATTATAGCTCAAAAAATTGTCACAATTTTGG ATACAATTTTAGCATATCCTGAAAAAACAAAACTTATAATTATGGCGCCAATTATCGAAGGTGAAAAAGGGAGTCACCAA AATTTAATTAAAAATCTTAAAAATCAAGGGTTTTTGCGCATAAAAATTAATAAATCTTTTTATTATTTAGCTGACGATAT TAAACTCGACCCAAAACAGAAGCACACAATTTGGGTAGTGATTGATCGATTTTTGCTTGAAAAAGAGGACAAAAATCGAC TTCAGTCAGCATTAGAACTTGCCTTTGATCTTGGAAAAGGAATTGCCCTTTGTGAATTTAATGAATCTGAAACTATCAGA TTTTCAAAATTACAAGCCTGTCCTTTTGGTGATTTTGAGATGCCAAATCTTGAAAATCGGCTTTTTTCTTTTAATTCACC TTATGGAATGTGCCAGGTTTGTAAAGGTTTGGGTACAAATTTGGAGGCTGATTTTGACCTTATTGTTCCGGATAAAAATT TAACTATAAATCAGGGAGCGATTAAATATTTTGGAAAATCAATAAATACAAAATCACTTGAATGACAAGAATTTAAAATT TTACTTGATTATTTTGAAATCTCGGCTGATCTAGAAATAGTAAAAATGAAGAAAAATGAGCTTGAAATAATCAAATATGG ATCAAAAGAATCTCTAAATTACTGACTAATTTCTGAAAGCGGGAAAAGATATGACTATTTTCGACCAATTGAAGGAATTC TTAATAAAATTCAGAGAAAATTTTGGGAGACATCAAGCGAAGATTTACGACTTTGATTTAAGAAAATGATGTCAGAATTT CCTTGTAGTAGTTGCAAAGGAGCCCGGCTTAACAAGTATGCGCTTGCCGTTTTCATTGAAAAGTATAATATCTTTCAATT ATCCCAACTTTCAATTAAAGATTTAATAACTTTTTTTAGAAATTTAAAATTAACTGAATTTGACGGAAAAATTTCTACTT TAATTCTCGATGAAATTAAATCACGACTGTCATTTTTAGCAAATGTTGGTCTTGAATATTTAACTTTAAATAGATCAACG GCAACCTTATCAGGAGGCGAATCCCAACGAATTAGGCTTGCAAGCCAGGTTGGATCTCAACTAACCGGAATTCTTTATGT TCTTGATGAACCTTCAATTGGCCTACATCAAAAAGATAATGACAAATTAATTGCGACACTGAAAAAAATGGTTGAAATTG GTAATAGTTTAATTGTAGTCGAGCATGATTTTGAGACAATTTTAGCTGCTGATTATATTGTTGATATCGGGCCAAAAGCT GGTGAAAACGGTGGTTTTTTGGTTGCTGCAGGATCAATTAAGGATATTGAAAATGAACCAAAATCACTTACCGGCCAATT TTTAACTGGAAAATTGGAAATTCCAGTACCAAAAAAACGACGGGCTGGCAATGGCAAATTTATAATTATTGAAAAAGCTG CTGAAAATAATTTAAAAAAAATTAATGTCAACATTCCTCTAGGCAAATTTGTTGTTGTCACTGGTGTTTCTGGATCTGGA AAGTCGACATTAGTTAATCAAATTATCGTAAATGCGATTGCCAAAAATCTTGGAACAACTAATATTCGCATTGGAAAATG TGAGGAAATTAAAGGGCTTTTTAATATTGATAAGTTGATTGCAATCAATCAAAGTCCAATCGGACGAACCCCTAGATCAA ATCCCGCAACTTATACCTCTGTTTTTGATGATATCCGTGAGGTTTTTGCCAATACTGAGCAGGCAAGAGCGCTTGGTTTT TCAAAGTCAAAATTTTCCTTTAATCTGCAAACTGGGCGGTGTGATAAATGCCAAGGAGACGGGCAAATTAAAATTGAAAT GTATTTTATGCCTGATATTTATGTTTTATGTGATCACTGCCAAGGAAAAAGATACAAGCCGGATGTCCTACAAATTCGTT TTTATGGAAAAACAATCGCGGATATTCTTGATTTAACAGTTTCAGAAGCACTTGAATTTTTCCATAATTGGCCTAAAATA ATCGCAAAATTACAAACCCTAGCTGATGTTGGTCTTGGTTATATAAAACTTGGCCAATCAGCAATAACTTTATCAGGAGG AGAAGCTCAACGAATTAAATTAGCCACTTTTTTACAAAAAAAACCTAAAGGAAAATCACTTTTTGTACTTGACGAGCCAA CAACTGGACTCCATAATTATGATGTTGCTAATTTAATTAAAGTGCTAAATCGAATAGTCGATAACGGTGATAGCATAATT GTAATCGAGCATAATTTAGAGGTAATTAAAGTTGCTGACTATATTATTGATTTAGGCCCAAACGGCGGGGATAACGGGGG CCAAATAGTTGCAAAAGGAACACCAGAAGCTGTAGCAAAAGTTAGTGAATCATATACTGGCGCTTATTTAAAAACAATTT TAAATATAAAATAA
Upstream 100 bases:
>100_bases GCTATAAATACTAAAATTAATAAAGAAAATAATAAAAAGACCTCACAAAAAAGTAATAAAATACCGAAAAATGCTTAAAA ATAAAGACACTCACAATTTT
Downstream 100 bases:
>100_bases TTGTTTTTAAATAAAAACCACCAAATAAATTTGGTGGTGCAGTTTTTTGCTTTAACTACAACTGCAAAGTCAAAGATGTT CATCTGAGCGGTTTGAACTA
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 937; Mature: 937
Protein sequence:
>937_residues MYIKGARENNLKNINLVLPKNKLIVFTGLSGSGKSSLAFNTIYEEGKRRYIDSLSSYARQFLGGTKKPKVDAIYGLLPTI SVEQKTSHNNPRSTVGTITEIYDYFRLLYAKIGKAFCPNHKVEIIAQKIVTILDTILAYPEKTKLIIMAPIIEGEKGSHQ NLIKNLKNQGFLRIKINKSFYYLADDIKLDPKQKHTIWVVIDRFLLEKEDKNRLQSALELAFDLGKGIALCEFNESETIR FSKLQACPFGDFEMPNLENRLFSFNSPYGMCQVCKGLGTNLEADFDLIVPDKNLTINQGAIKYFGKSINTKSLEWQEFKI LLDYFEISADLEIVKMKKNELEIIKYGSKESLNYWLISESGKRYDYFRPIEGILNKIQRKFWETSSEDLRLWFKKMMSEF PCSSCKGARLNKYALAVFIEKYNIFQLSQLSIKDLITFFRNLKLTEFDGKISTLILDEIKSRLSFLANVGLEYLTLNRST ATLSGGESQRIRLASQVGSQLTGILYVLDEPSIGLHQKDNDKLIATLKKMVEIGNSLIVVEHDFETILAADYIVDIGPKA GENGGFLVAAGSIKDIENEPKSLTGQFLTGKLEIPVPKKRRAGNGKFIIIEKAAENNLKKINVNIPLGKFVVVTGVSGSG KSTLVNQIIVNAIAKNLGTTNIRIGKCEEIKGLFNIDKLIAINQSPIGRTPRSNPATYTSVFDDIREVFANTEQARALGF SKSKFSFNLQTGRCDKCQGDGQIKIEMYFMPDIYVLCDHCQGKRYKPDVLQIRFYGKTIADILDLTVSEALEFFHNWPKI IAKLQTLADVGLGYIKLGQSAITLSGGEAQRIKLATFLQKKPKGKSLFVLDEPTTGLHNYDVANLIKVLNRIVDNGDSII VIEHNLEVIKVADYIIDLGPNGGDNGGQIVAKGTPEAVAKVSESYTGAYLKTILNIK
Sequences:
>Translated_937_residues MYIKGARENNLKNINLVLPKNKLIVFTGLSGSGKSSLAFNTIYEEGKRRYIDSLSSYARQFLGGTKKPKVDAIYGLLPTI SVEQKTSHNNPRSTVGTITEIYDYFRLLYAKIGKAFCPNHKVEIIAQKIVTILDTILAYPEKTKLIIMAPIIEGEKGSHQ NLIKNLKNQGFLRIKINKSFYYLADDIKLDPKQKHTIWVVIDRFLLEKEDKNRLQSALELAFDLGKGIALCEFNESETIR FSKLQACPFGDFEMPNLENRLFSFNSPYGMCQVCKGLGTNLEADFDLIVPDKNLTINQGAIKYFGKSINTKSLE*QEFKI LLDYFEISADLEIVKMKKNELEIIKYGSKESLNY*LISESGKRYDYFRPIEGILNKIQRKFWETSSEDLRL*FKKMMSEF PCSSCKGARLNKYALAVFIEKYNIFQLSQLSIKDLITFFRNLKLTEFDGKISTLILDEIKSRLSFLANVGLEYLTLNRST ATLSGGESQRIRLASQVGSQLTGILYVLDEPSIGLHQKDNDKLIATLKKMVEIGNSLIVVEHDFETILAADYIVDIGPKA GENGGFLVAAGSIKDIENEPKSLTGQFLTGKLEIPVPKKRRAGNGKFIIIEKAAENNLKKINVNIPLGKFVVVTGVSGSG KSTLVNQIIVNAIAKNLGTTNIRIGKCEEIKGLFNIDKLIAINQSPIGRTPRSNPATYTSVFDDIREVFANTEQARALGF SKSKFSFNLQTGRCDKCQGDGQIKIEMYFMPDIYVLCDHCQGKRYKPDVLQIRFYGKTIADILDLTVSEALEFFHNWPKI IAKLQTLADVGLGYIKLGQSAITLSGGEAQRIKLATFLQKKPKGKSLFVLDEPTTGLHNYDVANLIKVLNRIVDNGDSII VIEHNLEVIKVADYIIDLGPNGGDNGGQIVAKGTPEAVAKVSESYTGAYLKTILNIK >Mature_937_residues MYIKGARENNLKNINLVLPKNKLIVFTGLSGSGKSSLAFNTIYEEGKRRYIDSLSSYARQFLGGTKKPKVDAIYGLLPTI SVEQKTSHNNPRSTVGTITEIYDYFRLLYAKIGKAFCPNHKVEIIAQKIVTILDTILAYPEKTKLIIMAPIIEGEKGSHQ NLIKNLKNQGFLRIKINKSFYYLADDIKLDPKQKHTIWVVIDRFLLEKEDKNRLQSALELAFDLGKGIALCEFNESETIR FSKLQACPFGDFEMPNLENRLFSFNSPYGMCQVCKGLGTNLEADFDLIVPDKNLTINQGAIKYFGKSINTKSLE*QEFKI LLDYFEISADLEIVKMKKNELEIIKYGSKESLNY*LISESGKRYDYFRPIEGILNKIQRKFWETSSEDLRL*FKKMMSEF PCSSCKGARLNKYALAVFIEKYNIFQLSQLSIKDLITFFRNLKLTEFDGKISTLILDEIKSRLSFLANVGLEYLTLNRST ATLSGGESQRIRLASQVGSQLTGILYVLDEPSIGLHQKDNDKLIATLKKMVEIGNSLIVVEHDFETILAADYIVDIGPKA GENGGFLVAAGSIKDIENEPKSLTGQFLTGKLEIPVPKKRRAGNGKFIIIEKAAENNLKKINVNIPLGKFVVVTGVSGSG KSTLVNQIIVNAIAKNLGTTNIRIGKCEEIKGLFNIDKLIAINQSPIGRTPRSNPATYTSVFDDIREVFANTEQARALGF SKSKFSFNLQTGRCDKCQGDGQIKIEMYFMPDIYVLCDHCQGKRYKPDVLQIRFYGKTIADILDLTVSEALEFFHNWPKI IAKLQTLADVGLGYIKLGQSAITLSGGEAQRIKLATFLQKKPKGKSLFVLDEPTTGLHNYDVANLIKVLNRIVDNGDSII VIEHNLEVIKVADYIIDLGPNGGDNGGQIVAKGTPEAVAKVSESYTGAYLKTILNIK
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 3 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=937, Percent_Identity=49.4130202774813, Blast_Score=911, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 104349; Mature: 104349
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2 ; PS00284 SERPIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYIKGARENNLKNINLVLPKNKLIVFTGLSGSGKSSLAFNTIYEEGKRRYIDSLSSYARQ CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH FLGGTKKPKVDAIYGLLPTISVEQKTSHNNPRSTVGTITEIYDYFRLLYAKIGKAFCPNH HHCCCCCCCHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC KVEIIAQKIVTILDTILAYPEKTKLIIMAPIIEGEKGSHQNLIKNLKNQGFLRIKINKSF HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCE YYLADDIKLDPKQKHTIWVVIDRFLLEKEDKNRLQSALELAFDLGKGIALCEFNESETIR EEEEECCEECCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEE FSKLQACPFGDFEMPNLENRLFSFNSPYGMCQVCKGLGTNLEADFDLIVPDKNLTINQGA EEEECCCCCCCCCCCCHHHHHEECCCCCCHHHHHHHCCCCCCCCEEEEECCCCCEECCCH IKYFGKSINTKSLEQEFKILLDYFEISADLEIVKMKKNELEIIKYGSKESLNYLISESGK HHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCHHHHHHHHHCCCC RYDYFRPIEGILNKIQRKFWETSSEDLRLFKKMMSEFPCSSCKGARLNKYALAVFIEKYN CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCC IFQLSQLSIKDLITFFRNLKLTEFDGKISTLILDEIKSRLSFLANVGLEYLTLNRSTATL EEEEHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEE SGGESQRIRLASQVGSQLTGILYVLDEPSIGLHQKDNDKLIATLKKMVEIGNSLIVVEHD CCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC FETILAADYIVDIGPKAGENGGFLVAAGSIKDIENEPKSLTGQFLTGKLEIPVPKKRRAG HHHHHHHHHEEECCCCCCCCCCEEEEECCCHHCCCCCCHHCCCEEEEEEECCCCCCCCCC NGKFIIIEKAAENNLKKINVNIPLGKFVVVTGVSGSGKSTLVNQIIVNAIAKNLGTTNIR CCCEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEE IGKCEEIKGLFNIDKLIAINQSPIGRTPRSNPATYTSVFDDIREVFANTEQARALGFSKS ECCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCC KFSFNLQTGRCDKCQGDGQIKIEMYFMPDIYVLCDHCQGKRYKPDVLQIRFYGKTIADIL CEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCEEEEEECCHHHHHHH DLTVSEALEFFHNWPKIIAKLQTLADVGLGYIKLGQSAITLSGGEAQRIKLATFLQKKPK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCEEHHHHHHHCCCC GKSLFVLDEPTTGLHNYDVANLIKVLNRIVDNGDSIIVIEHNLEVIKVADYIIDLGPNGG CCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEHEECCCCCC DNGGQIVAKGTPEAVAKVSESYTGAYLKTILNIK CCCCEEEECCCHHHHHHHHHHCCHHHHHHHHCCC >Mature Secondary Structure MYIKGARENNLKNINLVLPKNKLIVFTGLSGSGKSSLAFNTIYEEGKRRYIDSLSSYARQ CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH FLGGTKKPKVDAIYGLLPTISVEQKTSHNNPRSTVGTITEIYDYFRLLYAKIGKAFCPNH HHCCCCCCCHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC KVEIIAQKIVTILDTILAYPEKTKLIIMAPIIEGEKGSHQNLIKNLKNQGFLRIKINKSF HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCE YYLADDIKLDPKQKHTIWVVIDRFLLEKEDKNRLQSALELAFDLGKGIALCEFNESETIR EEEEECCEECCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEE FSKLQACPFGDFEMPNLENRLFSFNSPYGMCQVCKGLGTNLEADFDLIVPDKNLTINQGA EEEECCCCCCCCCCCCHHHHHEECCCCCCHHHHHHHCCCCCCCCEEEEECCCCCEECCCH IKYFGKSINTKSLEQEFKILLDYFEISADLEIVKMKKNELEIIKYGSKESLNYLISESGK HHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCHHHHHHHHHCCCC RYDYFRPIEGILNKIQRKFWETSSEDLRLFKKMMSEFPCSSCKGARLNKYALAVFIEKYN CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCC IFQLSQLSIKDLITFFRNLKLTEFDGKISTLILDEIKSRLSFLANVGLEYLTLNRSTATL EEEEHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEE SGGESQRIRLASQVGSQLTGILYVLDEPSIGLHQKDNDKLIATLKKMVEIGNSLIVVEHD CCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC FETILAADYIVDIGPKAGENGGFLVAAGSIKDIENEPKSLTGQFLTGKLEIPVPKKRRAG HHHHHHHHHEEECCCCCCCCCCEEEEECCCHHCCCCCCHHCCCEEEEEEECCCCCCCCCC NGKFIIIEKAAENNLKKINVNIPLGKFVVVTGVSGSGKSTLVNQIIVNAIAKNLGTTNIR CCCEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEE IGKCEEIKGLFNIDKLIAINQSPIGRTPRSNPATYTSVFDDIREVFANTEQARALGFSKS ECCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCC KFSFNLQTGRCDKCQGDGQIKIEMYFMPDIYVLCDHCQGKRYKPDVLQIRFYGKTIADIL CEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCEEEEEECCHHHHHHH DLTVSEALEFFHNWPKIIAKLQTLADVGLGYIKLGQSAITLSGGEAQRIKLATFLQKKPK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCEEHHHHHHHCCCC GKSLFVLDEPTTGLHNYDVANLIKVLNRIVDNGDSIIVIEHNLEVIKVADYIIDLGPNGG CCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEHEECCCCCC DNGGQIVAKGTPEAVAKVSESYTGAYLKTILNIK CCCCEEEECCCHHHHHHHHHHCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11353084 [H]