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The map label for this gene is ygdP

Identifier: 71892046

GI number: 71892046

Start: 311330

End: 311806

Strand: Direct

Name: ygdP

Synonym: BPEN_272

Alternate gene names: 71892046

Gene position: 311330-311806 (Clockwise)

Preceding gene: 71892045

Following gene: 71892047

Centisome position: 39.33

GC content: 33.12

Gene sequence:

>477_bases
GTGATTGATGATAACGGTTACCGATTAAATGTAGGAATTGTGCTATGTAATACTCATCAGCAAGTATTATGGGCCAGAAA
ATATAAGCAGCATTACTGCTGGCAATTTCCTCAAGGTGGAATTAACATTGGAGAGACCCCAGAACAAGCCATGTATAGAG
AATTATTTGAAGAAATAGGATTGAATTATCAAGATGTTCGTATTCTATCTTCAACGCAATATTGGATGCATTATAAGTTA
CCTAAGAAATTAATTCGTTGGAAAATTAGGCCTATCTGCTTTGGGCAAAAACAAAAGTGGTTTTTATTAAAGCTTTTATC
TAAAGATACACGAATTAACATAAAAAGTAATAAAGACTACACATTTGACAGATGGAAGTGGGTTAGCTTATGGTATCCCA
TACGCCGAGTCGTATTCTTTAAAAGAGATGTATATAGAAAAGTTATGCAAGAATTTGTTGATGTGATAATATCATAG

Upstream 100 bases:

>100_bases
TACCGTTTCTTCATTTTTATAAAATATGATAGGAATAGTTATATTTATTATAAATATTTAAGAATTTAATGAAATATCTC
AATAAAACTGAGGCAATCTG

Downstream 100 bases:

>100_bases
TTTAACACTATGCGTCTTTATAAAGAAGAAAATCAGATACAGTATAATCAATAAAAAGAGTTTTAATATTCCATTGAAGA
TGCACACGATAATGTCTCTC

Product: dinucleoside polyphosphate hydrolase

Products: NA

Alternate protein names: (Di)nucleoside polyphosphate hydrolase

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MIDDNGYRLNVGIVLCNTHQQVLWARKYKQHYCWQFPQGGINIGETPEQAMYRELFEEIGLNYQDVRILSSTQYWMHYKL
PKKLIRWKIRPICFGQKQKWFLLKLLSKDTRINIKSNKDYTFDRWKWVSLWYPIRRVVFFKRDVYRKVMQEFVDVIIS

Sequences:

>Translated_158_residues
MIDDNGYRLNVGIVLCNTHQQVLWARKYKQHYCWQFPQGGINIGETPEQAMYRELFEEIGLNYQDVRILSSTQYWMHYKL
PKKLIRWKIRPICFGQKQKWFLLKLLSKDTRINIKSNKDYTFDRWKWVSLWYPIRRVVFFKRDVYRKVMQEFVDVIIS
>Mature_158_residues
MIDDNGYRLNVGIVLCNTHQQVLWARKYKQHYCWQFPQGGINIGETPEQAMYRELFEEIGLNYQDVRILSSTQYWMHYKL
PKKLIRWKIRPICFGQKQKWFLLKLLSKDTRINIKSNKDYTFDRWKWVSLWYPIRRVVFFKRDVYRKVMQEFVDVIIS

Specific function: Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain

Homologues:

Organism=Escherichia coli, GI1789194, Length=158, Percent_Identity=64.5569620253165, Blast_Score=230, Evalue=4e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPPH_BLOPB (Q493D9)

Other databases:

- EMBL:   CP000016
- RefSeq:   YP_277776.1
- ProteinModelPortal:   Q493D9
- SMR:   Q493D9
- STRING:   Q493D9
- GeneID:   3563209
- GenomeReviews:   CP000016_GR
- KEGG:   bpn:BPEN_272
- eggNOG:   COG0494
- HOGENOM:   HBG302451
- OMA:   GQKQIWY
- ProtClustDB:   PRK00714
- BioCyc:   CBLO291272:BPEN_272-MONOMER
- HAMAP:   MF_00298
- InterPro:   IPR020476
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR022927
- Gene3D:   G3DSA:3.90.79.10
- PRINTS:   PR00502

Pfam domain/function: PF00293 NUDIX; SSF55811 NUDIX_hydrolase

EC number: 3.6.1.- [C]

Molecular weight: Translated: 19464; Mature: 19464

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS51462 NUDIX; PS00893 NUDIX_BOX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDDNGYRLNVGIVLCNTHQQVLWARKYKQHYCWQFPQGGINIGETPEQAMYRELFEEIG
CCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHCEECCCCCCCCCCCHHHHHHHHHHHHHC
LNYQDVRILSSTQYWMHYKLPKKLIRWKIRPICFGQKQKWFLLKLLSKDTRINIKSNKDY
CCCHHEEEEECCCCEEEEHHHHHHHHEECCEEEECCCCHHHHHHHHCCCCEEEEECCCCC
TFDRWKWVSLWYPIRRVVFFKRDVYRKVMQEFVDVIIS
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIDDNGYRLNVGIVLCNTHQQVLWARKYKQHYCWQFPQGGINIGETPEQAMYRELFEEIG
CCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHCEECCCCCCCCCCCHHHHHHHHHHHHHC
LNYQDVRILSSTQYWMHYKLPKKLIRWKIRPICFGQKQKWFLLKLLSKDTRINIKSNKDY
CCCHHEEEEECCCCEEEEHHHHHHHHEECCEEEECCCCHHHHHHHHCCCCEEEEECCCCC
TFDRWKWVSLWYPIRRVVFFKRDVYRKVMQEFVDVIIS
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA