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The map label for this gene is yrdC

Identifier: 71892003

GI number: 71892003

Start: 258767

End: 259351

Strand: Direct

Name: yrdC

Synonym: BPEN_227

Alternate gene names: 71892003

Gene position: 258767-259351 (Clockwise)

Preceding gene: 71892000

Following gene: 71892004

Centisome position: 32.69

GC content: 34.7

Gene sequence:

>585_bases
TTGGAATTATTATCTACAATAAGGATATTTTCTTCACCAAATATGAAAGATTTACTTATACAGCTAAGTCAAGGGAAAGT
AATTATTTATCCAACAGAATCAGTGTTTGGTTTAGGGTGTGATCCTGATAATAAAAACGCAATATCTACTTTACTAAAAA
TAAAAAATAGATCTTGGAAAAAAGGTTTAATTTTAGTTGCTGCCAATTATACACAATTACTTAAGTATATTGATGATAGT
TGCTTAAATGAAACCCAACGATCACGAGTTTTTTCTACTTGGCCTGGACCGATGACATGGGTATTTCCGGCACAAGCTAA
TAGATCATATTGGTTAACAGGTCAATTTTCTTCCGTAGCAGTACGAGTCAGTCATTTTGAACCAATTCAACGTCTTTGCT
TGGCTTTTGGAAAACCCTTGGTATCCACTAGCGCGAATTTATCTGGACAGCTTCCTGCGCGTACTATTGAAGAAGTACAT
GATCAACTCGGGTATAAGATACCTATCATGCATGAAGATATACTTGGGAGACCCAATCCTTCAAAAATTAGAGATGTTAT
GACTGGTAAACTAATTCGTGAATAA

Upstream 100 bases:

>100_bases
TAGATTTTGAAGTTACCCAATTAATACTTGAAAATTTATTATTTTTAAATATCGATTTAAATAAAAGAATATTATATGTT
AATTTTTAATAAATAATTAA

Downstream 100 bases:

>100_bases
TTTTTTATTATTCAAGGAGATAAATAGATGAATTCTTTTGCTGTTTTTGGTAATCCGATTAGACATAGCAAATCAGCAGA
GATTTACGCATTATTTGCAC

Product: RNA-binding protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MELLSTIRIFSSPNMKDLLIQLSQGKVIIYPTESVFGLGCDPDNKNAISTLLKIKNRSWKKGLILVAANYTQLLKYIDDS
CLNETQRSRVFSTWPGPMTWVFPAQANRSYWLTGQFSSVAVRVSHFEPIQRLCLAFGKPLVSTSANLSGQLPARTIEEVH
DQLGYKIPIMHEDILGRPNPSKIRDVMTGKLIRE

Sequences:

>Translated_194_residues
MELLSTIRIFSSPNMKDLLIQLSQGKVIIYPTESVFGLGCDPDNKNAISTLLKIKNRSWKKGLILVAANYTQLLKYIDDS
CLNETQRSRVFSTWPGPMTWVFPAQANRSYWLTGQFSSVAVRVSHFEPIQRLCLAFGKPLVSTSANLSGQLPARTIEEVH
DQLGYKIPIMHEDILGRPNPSKIRDVMTGKLIRE
>Mature_194_residues
MELLSTIRIFSSPNMKDLLIQLSQGKVIIYPTESVFGLGCDPDNKNAISTLLKIKNRSWKKGLILVAANYTQLLKYIDDS
CLNETQRSRVFSTWPGPMTWVFPAQANRSYWLTGQFSSVAVRVSHFEPIQRLCLAFGKPLVSTSANLSGQLPARTIEEVH
DQLGYKIPIMHEDILGRPNPSKIRDVMTGKLIRE

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI2367210, Length=173, Percent_Identity=55.4913294797688, Blast_Score=205, Evalue=2e-54,
Organism=Drosophila melanogaster, GI78707274, Length=130, Percent_Identity=33.0769230769231, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMN_BLOPB (Q493I0)

Other databases:

- EMBL:   CP000016
- RefSeq:   YP_277733.1
- ProteinModelPortal:   Q493I0
- SMR:   Q493I0
- STRING:   Q493I0
- GeneID:   3563157
- GenomeReviews:   CP000016_GR
- KEGG:   bpn:BPEN_227
- eggNOG:   COG0009
- HOGENOM:   HBG738264
- OMA:   FGLGCNP
- ProtClustDB:   CLSK280745
- BioCyc:   CBLO291272:BPEN_227-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01852
- InterPro:   IPR017945
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 21879; Mature: 21879

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLSTIRIFSSPNMKDLLIQLSQGKVIIYPTESVFGLGCDPDNKNAISTLLKIKNRSWK
CCHHHHHHHHCCCCHHHHHEEECCCCEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCC
KGLILVAANYTQLLKYIDDSCLNETQRSRVFSTWPGPMTWVFPAQANRSYWLTGQFSSVA
CCEEEEECCHHHHHHHHHHHHHCHHHHCCEEECCCCCEEEEEECCCCCCEEEEECCCCEE
VRVSHFEPIQRLCLAFGKPLVSTSANLSGQLPARTIEEVHDQLGYKIPIMHEDILGRPNP
EEEHHHHHHHHHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEECHHHCCCCCH
SKIRDVMTGKLIRE
HHHHHHHHHHHHCC
>Mature Secondary Structure
MELLSTIRIFSSPNMKDLLIQLSQGKVIIYPTESVFGLGCDPDNKNAISTLLKIKNRSWK
CCHHHHHHHHCCCCHHHHHEEECCCCEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCC
KGLILVAANYTQLLKYIDDSCLNETQRSRVFSTWPGPMTWVFPAQANRSYWLTGQFSSVA
CCEEEEECCHHHHHHHHHHHHHCHHHHCCEEECCCCCEEEEEECCCCCCEEEEECCCCEE
VRVSHFEPIQRLCLAFGKPLVSTSANLSGQLPARTIEEVHDQLGYKIPIMHEDILGRPNP
EEEHHHHHHHHHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEECHHHCCCCCH
SKIRDVMTGKLIRE
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA