| Definition | Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome. |
|---|---|
| Accession | NC_007292 |
| Length | 791,654 |
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The map label for this gene is glyS [H]
Identifier: 71891813
GI number: 71891813
Start: 22156
End: 24243
Strand: Direct
Name: glyS [H]
Synonym: BPEN_020
Alternate gene names: 71891813
Gene position: 22156-24243 (Clockwise)
Preceding gene: 71891812
Following gene: 71891815
Centisome position: 2.8
GC content: 29.17
Gene sequence:
>2088_bases ATGAAAGTATGTACTTTTTTAGTAGAGATTGGTACTGAATCGTTACCATCTAAAATTTTAAAAAAATTAGGAAAAGACTT TTTTTATCAAATTATTAGTGGGTTTAAAAAAAATAATTTTGTTTACGATAAGGTTAATTGGTTTGCATCTTCATGTCGTT TAGCAGTCAAGGCTAATTTAATAATAAAAAGTGATTTTAATACTAATATTGCATGTGTTGATCAATCAGATACTGGTGAC ACATATGATAAATATATTAACAATACAGATACTCAAATCAATCATATAGTTAATAATATAAATATTAGAAGTGGTGTGTG CGTGAATAATGTTCAAAGAACATTGGAATGTGATACAAATATAGTAATACATAAAAATTTAAAATATTTATTGTGTAAAA TTATTAGTTCCGCTTTAGAAAAATTAAATAATTATGAAATGATGCGTTGGAGTGACATAGATATTCCATTTATTCGACCT GTTCGTACTGTGACTATATTGTTAGATACATATCTTATTCCGGGTTATTTTTTTGGAATGAAAACAGATCGGGTATTGTA TGGCAATAGATGTATGGAAGACGATAAAATTACTCTTGAACATGCAGATCATTATCCAGATGTTTTGATTAAAAACGGTT GGGTAATAGCAGATTACGATATACGTAAAAATATTATATGTTCGGAGATAGAAAAAGAAGCTAGAAAACTTGGGGGAGTT GTAGATGTTCAGGATGAAAAAATTTTGTTAGAAGAGGTTACTTCGTTAGTTGAATGGCCTGTAATTCTTTCTGGCCAATT TAATAATAAATTTTTGGTATTACCACGCGAAGTAATACTTCATATTATGAAATACGATCAAAAATATTTTCCGGTGTATA ATGTTATCGATGGAGTTTTATTACCGTATTTTATTTTCGTATCGAATACGATTTCAGATAACTATAAGAAAATTATTGCT GGACATGAAAATGTGATAATTCCACGTTTAATGGATGCAGAGTTTTTTTTAATGCAAGATAATAAATGTCGTTTGGAAGA TTATATACCTAAATTAAATTCTGTGCTATTTCATAGCAGGCTTGGTACTTTGCGTGATAAAAGTTGGCGTATAGCAGAAT TATCTGGATGGATTGCTGAAAAAATAGGTATAGATATAGAACAGACAAAACGCGCTGGGTATTTGTGTAAGTGTGATTTA ATGAGCAATATGGTATTTGAGTTTCCTTCAGCTCAAGGAACTATCGGTATGCATTATGCTCTCCGTGATGGTGAGTCAGA AGAAATAGCATTAGCACAAAAGGAACATTATCAACCACGTTTTTCTAAGGATACACTTCCTACTACTCATATTTCTTGTG CTGTATCTATCGCAGATAAAATGGATACTATATCAGGTATATTTGGTGTGAAAGAGTTACCGAAAGGTAATAGAGATCCG TTTGCTTTAAAGAGATCTGCAATTGGAATTTTACGTATTCTTATGTATAAAAAATTACCAATAAATTTGTTTGATCTAAT ACAAAAGTCAGTAAAATTATATGGTTCGCAATTAATTAATACGACAGTTATTAATGATATTCATCATTTTATGTATAATC GTTTACTTTCCTGGTATTCCTCGAGAGGTTATAAACTAGATGTTATTAAAGCAGTTTTAAGTGTTAAATCTGATAGCGTA GTAGATATCGATGCCCGAATACGAGCAGTTACTGATTTTTTTGGATTACAAAAAGAGGAAAATGTTAAGGTAAATTTAAT TTATAAACGCATATCTAATATACTATTAAAAAATAAAATATCTTGTAATGAGGATGTGCAACATTTTTTATTAAAAATAC CAGAAGAAATATGTTTAGCCATGGAGGTGATTTTGATAGAAAAGAGGCTACAGGTATTGTGCATGCACCATCGTTATTAT GATGCACTAACTATTGCTATAACAATAACAAGCGCAGTAAATGCATTTTTTGATAATGTTATAATTATGGATGAAAATGA AGATGTAAGAATTAATCGATTAACCTTGCTAAATAAGGTTAAAAATTTATTTTTAAGGGTAGCGGATATTTCTTTATTAA AATTTTAA
Upstream 100 bases:
>100_bases TATCAAAAATGATAGCAGAAGCTTACTATGCATCTCGTAAAAAATTAGGATTTCCTATGTGTATGAGGAAATTATAATAT AATGCAAGGATAATTTTATA
Downstream 100 bases:
>100_bases ATATACGAATATACATCTCAAGACACTTACGGATTGAGATTTAGAAAGTGGTCATAAGTTTTACATGAATGTTAAAAAAT CTGACCACTTTAGTTAATTA
Product: glycine-tRNA synthetase, beta subunit
Products: NA
Alternate protein names: Glycine--tRNA ligase beta subunit; GlyRS [H]
Number of amino acids: Translated: 695; Mature: 695
Protein sequence:
>695_residues MKVCTFLVEIGTESLPSKILKKLGKDFFYQIISGFKKNNFVYDKVNWFASSCRLAVKANLIIKSDFNTNIACVDQSDTGD TYDKYINNTDTQINHIVNNINIRSGVCVNNVQRTLECDTNIVIHKNLKYLLCKIISSALEKLNNYEMMRWSDIDIPFIRP VRTVTILLDTYLIPGYFFGMKTDRVLYGNRCMEDDKITLEHADHYPDVLIKNGWVIADYDIRKNIICSEIEKEARKLGGV VDVQDEKILLEEVTSLVEWPVILSGQFNNKFLVLPREVILHIMKYDQKYFPVYNVIDGVLLPYFIFVSNTISDNYKKIIA GHENVIIPRLMDAEFFLMQDNKCRLEDYIPKLNSVLFHSRLGTLRDKSWRIAELSGWIAEKIGIDIEQTKRAGYLCKCDL MSNMVFEFPSAQGTIGMHYALRDGESEEIALAQKEHYQPRFSKDTLPTTHISCAVSIADKMDTISGIFGVKELPKGNRDP FALKRSAIGILRILMYKKLPINLFDLIQKSVKLYGSQLINTTVINDIHHFMYNRLLSWYSSRGYKLDVIKAVLSVKSDSV VDIDARIRAVTDFFGLQKEENVKVNLIYKRISNILLKNKISCNEDVQHFLLKIPEEICLAMEVILIEKRLQVLCMHHRYY DALTIAITITSAVNAFFDNVIIMDENEDVRINRLTLLNKVKNLFLRVADISLLKF
Sequences:
>Translated_695_residues MKVCTFLVEIGTESLPSKILKKLGKDFFYQIISGFKKNNFVYDKVNWFASSCRLAVKANLIIKSDFNTNIACVDQSDTGD TYDKYINNTDTQINHIVNNINIRSGVCVNNVQRTLECDTNIVIHKNLKYLLCKIISSALEKLNNYEMMRWSDIDIPFIRP VRTVTILLDTYLIPGYFFGMKTDRVLYGNRCMEDDKITLEHADHYPDVLIKNGWVIADYDIRKNIICSEIEKEARKLGGV VDVQDEKILLEEVTSLVEWPVILSGQFNNKFLVLPREVILHIMKYDQKYFPVYNVIDGVLLPYFIFVSNTISDNYKKIIA GHENVIIPRLMDAEFFLMQDNKCRLEDYIPKLNSVLFHSRLGTLRDKSWRIAELSGWIAEKIGIDIEQTKRAGYLCKCDL MSNMVFEFPSAQGTIGMHYALRDGESEEIALAQKEHYQPRFSKDTLPTTHISCAVSIADKMDTISGIFGVKELPKGNRDP FALKRSAIGILRILMYKKLPINLFDLIQKSVKLYGSQLINTTVINDIHHFMYNRLLSWYSSRGYKLDVIKAVLSVKSDSV VDIDARIRAVTDFFGLQKEENVKVNLIYKRISNILLKNKISCNEDVQHFLLKIPEEICLAMEVILIEKRLQVLCMHHRYY DALTIAITITSAVNAFFDNVIIMDENEDVRINRLTLLNKVKNLFLRVADISLLKF >Mature_695_residues MKVCTFLVEIGTESLPSKILKKLGKDFFYQIISGFKKNNFVYDKVNWFASSCRLAVKANLIIKSDFNTNIACVDQSDTGD TYDKYINNTDTQINHIVNNINIRSGVCVNNVQRTLECDTNIVIHKNLKYLLCKIISSALEKLNNYEMMRWSDIDIPFIRP VRTVTILLDTYLIPGYFFGMKTDRVLYGNRCMEDDKITLEHADHYPDVLIKNGWVIADYDIRKNIICSEIEKEARKLGGV VDVQDEKILLEEVTSLVEWPVILSGQFNNKFLVLPREVILHIMKYDQKYFPVYNVIDGVLLPYFIFVSNTISDNYKKIIA GHENVIIPRLMDAEFFLMQDNKCRLEDYIPKLNSVLFHSRLGTLRDKSWRIAELSGWIAEKIGIDIEQTKRAGYLCKCDL MSNMVFEFPSAQGTIGMHYALRDGESEEIALAQKEHYQPRFSKDTLPTTHISCAVSIADKMDTISGIFGVKELPKGNRDP FALKRSAIGILRILMYKKLPINLFDLIQKSVKLYGSQLINTTVINDIHHFMYNRLLSWYSSRGYKLDVIKAVLSVKSDSV VDIDARIRAVTDFFGLQKEENVKVNLIYKRISNILLKNKISCNEDVQHFLLKIPEEICLAMEVILIEKRLQVLCMHHRYY DALTIAITITSAVNAFFDNVIIMDENEDVRINRLTLLNKVKNLFLRVADISLLKF
Specific function: Unknown
COG id: COG0751
COG function: function code J; Glycyl-tRNA synthetase, beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1789982, Length=700, Percent_Identity=43.7142857142857, Blast_Score=607, Evalue=1e-175,
Paralogues:
None
Copy number: 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 400 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008909 - InterPro: IPR006194 - InterPro: IPR015944 - InterPro: IPR002311 [H]
Pfam domain/function: PF05746 DALR_1; PF02092 tRNA_synt_2f [H]
EC number: =6.1.1.14 [H]
Molecular weight: Translated: 80122; Mature: 80122
Theoretical pI: Translated: 8.04; Mature: 8.04
Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVCTFLVEIGTESLPSKILKKLGKDFFYQIISGFKKNNFVYDKVNWFASSCRLAVKANL CCHHHEEHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCEEEEEEEE IIKSDFNTNIACVDQSDTGDTYDKYINNTDTQINHIVNNINIRSGVCVNNVQRTLECDTN EEEECCCCCEEEEECCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC IVIHKNLKYLLCKIISSALEKLNNYEMMRWSDIDIPFIRPVRTVTILLDTYLIPGYFFGM EEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHCCC KTDRVLYGNRCMEDDKITLEHADHYPDVLIKNGWVIADYDIRKNIICSEIEKEARKLGGV CCCEEEECCCCCCCCCEEEECCCCCCCEEEECCEEEEECCHHCCHHHHHHHHHHHHHCCE VDVQDEKILLEEVTSLVEWPVILSGQFNNKFLVLPREVILHIMKYDQKYFPVYNVIDGVL EECCCCHHHHHHHHHHHHCCEEEECCCCCEEEEECHHHHHHHHHHCCCCCCHHHHHHHHH LPYFIFVSNTISDNYKKIIAGHENVIIPRLMDAEFFLMQDNKCRLEDYIPKLNSVLFHSR HHHHHHHHCCCCCCHHHHHCCCCCEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHH LGTLRDKSWRIAELSGWIAEKIGIDIEQTKRAGYLCKCDLMSNMVFEFPSAQGTIGMHYA HCCCCCCCEEEEHHHHHHHHHHCCCHHHHCCCCCEEEHHHHHHHHHCCCCCCCCEEEEEE LRDGESEEIALAQKEHYQPRFSKDTLPTTHISCAVSIADKMDTISGIFGVKELPKGNRDP ECCCCCCCEEEHHHHCCCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHHCHHHCCCCCCCC FALKRSAIGILRILMYKKLPINLFDLIQKSVKLYGSQLINTTVINDIHHFMYNRLLSWYS HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SRGYKLDVIKAVLSVKSDSVVDIDARIRAVTDFFGLQKEENVKVNLIYKRISNILLKNKI CCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHCCC SCNEDVQHFLLKIPEEICLAMEVILIEKRLQVLCMHHRYYDALTIAITITSAVNAFFDNV CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEHHHHHHHHHCCE IIMDENEDVRINRLTLLNKVKNLFLRVADISLLKF EEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKVCTFLVEIGTESLPSKILKKLGKDFFYQIISGFKKNNFVYDKVNWFASSCRLAVKANL CCHHHEEHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCEEEEEEEE IIKSDFNTNIACVDQSDTGDTYDKYINNTDTQINHIVNNINIRSGVCVNNVQRTLECDTN EEEECCCCCEEEEECCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC IVIHKNLKYLLCKIISSALEKLNNYEMMRWSDIDIPFIRPVRTVTILLDTYLIPGYFFGM EEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHCCC KTDRVLYGNRCMEDDKITLEHADHYPDVLIKNGWVIADYDIRKNIICSEIEKEARKLGGV CCCEEEECCCCCCCCCEEEECCCCCCCEEEECCEEEEECCHHCCHHHHHHHHHHHHHCCE VDVQDEKILLEEVTSLVEWPVILSGQFNNKFLVLPREVILHIMKYDQKYFPVYNVIDGVL EECCCCHHHHHHHHHHHHCCEEEECCCCCEEEEECHHHHHHHHHHCCCCCCHHHHHHHHH LPYFIFVSNTISDNYKKIIAGHENVIIPRLMDAEFFLMQDNKCRLEDYIPKLNSVLFHSR HHHHHHHHCCCCCCHHHHHCCCCCEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHH LGTLRDKSWRIAELSGWIAEKIGIDIEQTKRAGYLCKCDLMSNMVFEFPSAQGTIGMHYA HCCCCCCCEEEEHHHHHHHHHHCCCHHHHCCCCCEEEHHHHHHHHHCCCCCCCCEEEEEE LRDGESEEIALAQKEHYQPRFSKDTLPTTHISCAVSIADKMDTISGIFGVKELPKGNRDP ECCCCCCCEEEHHHHCCCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHHCHHHCCCCCCCC FALKRSAIGILRILMYKKLPINLFDLIQKSVKLYGSQLINTTVINDIHHFMYNRLLSWYS HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SRGYKLDVIKAVLSVKSDSVVDIDARIRAVTDFFGLQKEENVKVNLIYKRISNILLKNKI CCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHCCC SCNEDVQHFLLKIPEEICLAMEVILIEKRLQVLCMHHRYYDALTIAITITSAVNAFFDNV CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEHHHHHHHHHCCE IIMDENEDVRINRLTLLNKVKNLFLRVADISLLKF EEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA