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The map label for this gene is rnpA

Identifier: 71891806

GI number: 71891806

Start: 14295

End: 14642

Strand: Reverse

Name: rnpA

Synonym: BPEN_013

Alternate gene names: 71891806

Gene position: 14642-14295 (Counterclockwise)

Preceding gene: 71891807

Following gene: 71891805

Centisome position: 1.85

GC content: 31.03

Gene sequence:

>348_bases
ATGAATAGAAAATTTTTACCTAAACGGGCACGCTTGTTAAATTTAAATGAGTTTATTTTTGTATTTCAAAAGCCAGAACG
CGTCAAAACAACTGGAATCACTTTGTTCAGTCGATCCAATCGATTAGGGTATCCTCGTATTGGGCTAGCTATCTCAAAAA
AATATGTTAAGTATGCTCATGAACGCAATAGAATAAAGAGACATATTCGTGAAACTTTTCGTACATGTCAACATAACTTA
TTAGCTAAAGACTTTGTTCTAACTATTCGCTCAAAAGAGATTATTTATTACAAAAATAAAACATTGATACAAGAACTCGA
AAAATTATGGTATCACCATTTGTGTTAA

Upstream 100 bases:

>100_bases
AAGGCCGTAAAATATTATCAAGGCGTAGGTCTAAAGGGCGCGTTCGATTGGTTGTATCTGTTTTAAATATTCACTAAAAT
TTTATTAGTGCAGCAACCAA

Downstream 100 bases:

>100_bases
TAGAAAAAAGCATAATATGGCTGATATATGGATACCAAGTCAGTGTCAGTCCTATATTGGGCCATCATTGTCGTTTTCAA
AAAACATGTTCTCAATATGG

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MNRKFLPKRARLLNLNEFIFVFQKPERVKTTGITLFSRSNRLGYPRIGLAISKKYVKYAHERNRIKRHIRETFRTCQHNL
LAKDFVLTIRSKEIIYYKNKTLIQELEKLWYHHLC

Sequences:

>Translated_115_residues
MNRKFLPKRARLLNLNEFIFVFQKPERVKTTGITLFSRSNRLGYPRIGLAISKKYVKYAHERNRIKRHIRETFRTCQHNL
LAKDFVLTIRSKEIIYYKNKTLIQELEKLWYHHLC
>Mature_115_residues
MNRKFLPKRARLLNLNEFIFVFQKPERVKTTGITLFSRSNRLGYPRIGLAISKKYVKYAHERNRIKRHIRETFRTCQHNL
LAKDFVLTIRSKEIIYYKNKTLIQELEKLWYHHLC

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

Organism=Escherichia coli, GI1790139, Length=107, Percent_Identity=51.4018691588785, Blast_Score=110, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_BLOPB (Q494B8)

Other databases:

- EMBL:   CP000016
- RefSeq:   YP_277535.1
- ProteinModelPortal:   Q494B8
- SMR:   Q494B8
- STRING:   Q494B8
- GeneID:   3562628
- GenomeReviews:   CP000016_GR
- KEGG:   bpn:BPEN_013
- eggNOG:   COG0594
- HOGENOM:   HBG728160
- OMA:   PRIGLAI
- ProtClustDB:   PRK01732
- BioCyc:   CBLO291272:BPEN_013-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 14051; Mature: 14051

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRKFLPKRARLLNLNEFIFVFQKPERVKTTGITLFSRSNRLGYPRIGLAISKKYVKYAH
CCCCCCCCHHHHCCCCCEEEEEECCCCEEHHCEEEEECCCCCCCCCHHHHHHHHHHHHHH
ERNRIKRHIRETFRTCQHNLLAKDFVLTIRSKEIIYYKNKTLIQELEKLWYHHLC
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEECCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNRKFLPKRARLLNLNEFIFVFQKPERVKTTGITLFSRSNRLGYPRIGLAISKKYVKYAH
CCCCCCCCHHHHCCCCCEEEEEECCCCEEHHCEEEEECCCCCCCCCHHHHHHHHHHHHHH
ERNRIKRHIRETFRTCQHNLLAKDFVLTIRSKEIIYYKNKTLIQELEKLWYHHLC
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEECCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA