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The map label for this gene is tnp3516b2 [H]

Identifier: 68536647

GI number: 68536647

Start: 1831490

End: 1832161

Strand: Direct

Name: tnp3516b2 [H]

Synonym: jk1561

Alternate gene names: 68536647

Gene position: 1831490-1832161 (Clockwise)

Preceding gene: 68536646

Following gene: 68536651

Centisome position: 74.38

GC content: 54.91

Gene sequence:

>672_bases
GTGTTACTTGACCTGCGTAACCAGGGGTGGGTGGTCAACCACAAACTCGTGCACAAGCTCATGTGCGAGATGGGGCTGCG
AGCCAAGATTCGCCAACGTAGACCTTATGTTTCCTATGCTGGGACGATCAGTCACATCGCTGACAACAAGCTTGACCGCA
AGTTCACCCCGGATCAGCCAAATACCGTCTTTGTCAGCGACGTCACCGAGTTCAGGGTCGCAGGTCGCAAGGTCTACCTG
TCACCGGTGATGGACCTGTTCGATCGCTCAATTGTTGCCCACACCGTGGCTACATCGCCGTCGACAGCGTTTACCGCTGC
CTCTTTGTCCAAGGCGATTAAAACGTGTGCGCCTGAACCCGGGTGGATGATGCACACTGACCAAGGCTTCCAGTACCAGC
ACGCCTCCTGGCGCGACCTGATCGGTGACAACGGCGGTGTTCAGTCGATGTCGCGTAAAGCCAACTGTTACGACAACGCG
GTCATGGAGAACTTCTTCGGCCACTTGAAAACCGAGATGTACCACGGTGAAGTCTTCGGCACCGTCGCAGAATTCAACCA
AGCAATCGACGAATACATCCAGTGGTACAACACCGAACGCATCCAACAACGACTCAAGGGCCTGACCCCGATGCAATATC
GGAATCAGACCCTTGAAACCCTAACCGCATAG

Upstream 100 bases:

>100_bases
CCACCAGAAACGACTCAGTAAGCCGGATAAGCACGCCGCGCTCAAGGCCGAGATCCGGGAAAGCTTCGAGCGCAACAAGC
ATCGCTACGGCTACCGGCGA

Downstream 100 bases:

>100_bases
AATTAAACCAGTCCAACTTTCGGGGGCTAGTTCACGTACGGCGGTCGGGAGGTTTTTCGTCTACCCAGTGCAGCTTTTCA
AGACTCTTCAAGGTGAGGGG

Product: transposase for IS3516b

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MLLDLRNQGWVVNHKLVHKLMCEMGLRAKIRQRRPYVSYAGTISHIADNKLDRKFTPDQPNTVFVSDVTEFRVAGRKVYL
SPVMDLFDRSIVAHTVATSPSTAFTAASLSKAIKTCAPEPGWMMHTDQGFQYQHASWRDLIGDNGGVQSMSRKANCYDNA
VMENFFGHLKTEMYHGEVFGTVAEFNQAIDEYIQWYNTERIQQRLKGLTPMQYRNQTLETLTA

Sequences:

>Translated_223_residues
MLLDLRNQGWVVNHKLVHKLMCEMGLRAKIRQRRPYVSYAGTISHIADNKLDRKFTPDQPNTVFVSDVTEFRVAGRKVYL
SPVMDLFDRSIVAHTVATSPSTAFTAASLSKAIKTCAPEPGWMMHTDQGFQYQHASWRDLIGDNGGVQSMSRKANCYDNA
VMENFFGHLKTEMYHGEVFGTVAEFNQAIDEYIQWYNTERIQQRLKGLTPMQYRNQTLETLTA
>Mature_223_residues
MLLDLRNQGWVVNHKLVHKLMCEMGLRAKIRQRRPYVSYAGTISHIADNKLDRKFTPDQPNTVFVSDVTEFRVAGRKVYL
SPVMDLFDRSIVAHTVATSPSTAFTAASLSKAIKTCAPEPGWMMHTDQGFQYQHASWRDLIGDNGGVQSMSRKANCYDNA
VMENFFGHLKTEMYHGEVFGTVAEFNQAIDEYIQWYNTERIQQRLKGLTPMQYRNQTLETLTA

Specific function: Involved in the transposition of the insertion sequence IS150 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=169, Percent_Identity=27.2189349112426, Blast_Score=72, Evalue=4e-13,
Organism=Escherichia coli, GI1789981, Length=215, Percent_Identity=43.7209302325581, Blast_Score=200, Evalue=7e-53,
Organism=Escherichia coli, GI1788405, Length=216, Percent_Identity=31.4814814814815, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787263, Length=216, Percent_Identity=31.4814814814815, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786753, Length=216, Percent_Identity=31.4814814814815, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786570, Length=216, Percent_Identity=31.4814814814815, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786490, Length=216, Percent_Identity=31.4814814814815, Blast_Score=106, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 25517; Mature: 25517

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLDLRNQGWVVNHKLVHKLMCEMGLRAKIRQRRPYVSYAGTISHIADNKLDRKFTPDQP
CEEECCCCCEEECHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC
NTVFVSDVTEFRVAGRKVYLSPVMDLFDRSIVAHTVATSPSTAFTAASLSKAIKTCAPEP
CEEEEECHHHHHHCCCEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
GWMMHTDQGFQYQHASWRDLIGDNGGVQSMSRKANCYDNAVMENFFGHLKTEMYHGEVFG
CEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
TVAEFNQAIDEYIQWYNTERIQQRLKGLTPMQYRNQTLETLTA
HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MLLDLRNQGWVVNHKLVHKLMCEMGLRAKIRQRRPYVSYAGTISHIADNKLDRKFTPDQP
CEEECCCCCEEECHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC
NTVFVSDVTEFRVAGRKVYLSPVMDLFDRSIVAHTVATSPSTAFTAASLSKAIKTCAPEP
CEEEEECHHHHHHCCCEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
GWMMHTDQGFQYQHASWRDLIGDNGGVQSMSRKANCYDNAVMENFFGHLKTEMYHGEVFG
CEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
TVAEFNQAIDEYIQWYNTERIQQRLKGLTPMQYRNQTLETLTA
HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2841644; 2541046; 8041620; 9278503 [H]