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The map label for this gene is tnp3523a3 [C]

Identifier: 68536338

GI number: 68536338

Start: 1479691

End: 1480380

Strand: Direct

Name: tnp3523a3 [C]

Synonym: jk1258

Alternate gene names: 68536338

Gene position: 1479691-1480380 (Clockwise)

Preceding gene: 68536337

Following gene: 68536339

Centisome position: 60.09

GC content: 53.77

Gene sequence:

>690_bases
ATGATCCGGTTCATCGATGAATACCGGAATGGTTTCTCTGTCGAGTTTATCTGTAAGACGTTGAAGAATAACCGGGCTGG
TGGGTTCATCACCTTGCGTGGGTATCGCCAGTCCAAGTCCTGTGGATTAAGTGCTCGTCGCCTTCGTGATGCTGTGCTGG
CTGAACGCATTAGTGCTATTCATCAGGATAATTACGGTGTCTACGGTGTGCGGAAGATGTGGCATGCTCTTCACCGTGAC
GGAATCGATATCGGTCGTGAACAAACTGCCCGTTTAATGCGCCTGGCTGGTGTTTTTGGCAAAGGCAAAGGCGGATCACC
AATCACAACCCGTAAGCCTAACGTGCCGGAACTGCGCCCGGACTTGGTCGAGCGTGAATTCACAGCCCAGGGCCCGAACA
AGCTGTGGGTGGCCGACATTACGTATGTGCGCACGAAGAAAAGCTTTGTGTATGCCGCGTTTGTTACCGACGTTTACTCC
CGACGGATCGTTGGGTGGGCGTTATCGGACTCGATGCGGACCGAAGCGTTGCCGCTGCAAGCTCTCAACCGGGCGATCGT
GTGTGCTGAGGAAACAACAGGTCTCATTCATCATTCGGATCACGGCTCGCAGTACGTCAGCGTTGTCTACAACGAGTGTC
TTGCCCAGCACGGTGTCTGGTTCGGTGACATCGTTCCGCATGTCTCATGA

Upstream 100 bases:

>100_bases
CGAGGCTACGCCGTGAAACTCAAGAGCTACGCGACACTAACGAGCTGCTGAAGGCTGCCTCAGCTTTCTTCACGTCGGAA
CTCGACCCACAACATCGGAA

Downstream 100 bases:

>100_bases
GATCGTTCCGGTGCCGAGAACCATCATGTCTCGTCACATCGTTCGAGGGTGTCAGGAAGTTTGTGTGTGAGGCTCTGATC
TAGAAGGAGTTTCACTGATA

Product: transposase for IS3523

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MIRFIDEYRNGFSVEFICKTLKNNRAGGFITLRGYRQSKSCGLSARRLRDAVLAERISAIHQDNYGVYGVRKMWHALHRD
GIDIGREQTARLMRLAGVFGKGKGGSPITTRKPNVPELRPDLVEREFTAQGPNKLWVADITYVRTKKSFVYAAFVTDVYS
RRIVGWALSDSMRTEALPLQALNRAIVCAEETTGLIHHSDHGSQYVSVVYNECLAQHGVWFGDIVPHVS

Sequences:

>Translated_229_residues
MIRFIDEYRNGFSVEFICKTLKNNRAGGFITLRGYRQSKSCGLSARRLRDAVLAERISAIHQDNYGVYGVRKMWHALHRD
GIDIGREQTARLMRLAGVFGKGKGGSPITTRKPNVPELRPDLVEREFTAQGPNKLWVADITYVRTKKSFVYAAFVTDVYS
RRIVGWALSDSMRTEALPLQALNRAIVCAEETTGLIHHSDHGSQYVSVVYNECLAQHGVWFGDIVPHVS
>Mature_229_residues
MIRFIDEYRNGFSVEFICKTLKNNRAGGFITLRGYRQSKSCGLSARRLRDAVLAERISAIHQDNYGVYGVRKMWHALHRD
GIDIGREQTARLMRLAGVFGKGKGGSPITTRKPNVPELRPDLVEREFTAQGPNKLWVADITYVRTKKSFVYAAFVTDVYS
RRIVGWALSDSMRTEALPLQALNRAIVCAEETTGLIHHSDHGSQYVSVVYNECLAQHGVWFGDIVPHVS

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=214, Percent_Identity=39.7196261682243, Blast_Score=142, Evalue=2e-34,
Organism=Escherichia coli, GI1788405, Length=217, Percent_Identity=30.4147465437788, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787263, Length=217, Percent_Identity=30.4147465437788, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786753, Length=217, Percent_Identity=30.4147465437788, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786570, Length=217, Percent_Identity=30.4147465437788, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786490, Length=217, Percent_Identity=30.4147465437788, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789981, Length=169, Percent_Identity=28.4023668639053, Blast_Score=74, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 25828; Mature: 25828

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRFIDEYRNGFSVEFICKTLKNNRAGGFITLRGYRQSKSCGLSARRLRDAVLAERISAI
CCEEHHHHCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
HQDNYGVYGVRKMWHALHRDGIDIGREQTARLMRLAGVFGKGKGGSPITTRKPNVPELRP
HCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
DLVEREFTAQGPNKLWVADITYVRTKKSFVYAAFVTDVYSRRIVGWALSDSMRTEALPLQ
HHHHHHHCCCCCCEEEEEEEEEEECHHHEEHHHHHHHHHHHHHHEEECCCCHHHHCCCHH
ALNRAIVCAEETTGLIHHSDHGSQYVSVVYNECLAQHGVWFGDIVPHVS
HHCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHCCCCHHHHCCCCC
>Mature Secondary Structure
MIRFIDEYRNGFSVEFICKTLKNNRAGGFITLRGYRQSKSCGLSARRLRDAVLAERISAI
CCEEHHHHCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
HQDNYGVYGVRKMWHALHRDGIDIGREQTARLMRLAGVFGKGKGGSPITTRKPNVPELRP
HCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
DLVEREFTAQGPNKLWVADITYVRTKKSFVYAAFVTDVYSRRIVGWALSDSMRTEALPLQ
HHHHHHHCCCCCCEEEEEEEEEEECHHHEEHHHHHHHHHHHHHHEEECCCCHHHHCCCHH
ALNRAIVCAEETTGLIHHSDHGSQYVSVVYNECLAQHGVWFGDIVPHVS
HHCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]