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The map label for this gene is rnd [H]

Identifier: 68536154

GI number: 68536154

Start: 1269481

End: 1270752

Strand: Direct

Name: rnd [H]

Synonym: jk1077

Alternate gene names: 68536154

Gene position: 1269481-1270752 (Clockwise)

Preceding gene: 68536153

Following gene: 68536160

Centisome position: 51.55

GC content: 61.4

Gene sequence:

>1272_bases
GTGAGTTTTATCTCTGTTCCCGCCGCCGGCACGCCGTTGCTACGGGATACCCCGCAGCAAATCGATGCAGTATCCCGCGT
ACTCGCCGCAGGCACCGGCCCTATCGCCATAGATACGGAGCGCGCCTCTGCCTACCGCTATGACGATCGCGCATTCCTCA
TTCAGCTGCGACGCCACGGCTCCGGTACATTCCTGATAGATCCCGAAGCCGAACCCCAAGCCACCCGCCGCATGGCCGAG
GTCGTGAACGAAGCCGAATGGGTGCTCCACGCGGCGCACACCGACCTGCCCTGCCTGATGGCCCTAGGTTGGCGCCCGCA
AGTACTGCATGACACGCAGATTGCCGGACAGCTCCTAGGTGCCGAACGCATCGGGCTATCCGGCATGCTAGATGCCTACT
TCGATATTCAGGTCCCCAAAGATAAAGGCAACGCGGATTGGTCGCGCAGACCATTGACCCAAGCGATGCTGAACTACGCC
GCCTTAGATGTCGAATGGCTCCTCGAACTATTGGACTGTTGTCTAGAAGAGCTCGCCAAAACCGGCCGCACAGAATGGTA
TATCCAGGAGTGTCAACACGTGCTTGCCTCTGCCTCTCCCCTGTCCGCAAACGACTGGACAGACTTGAAGGGGTTAAGCT
CCCTGCGCCGCGCTCTGCCTCGCCGGATCGCCCACGACCTCTGGGAATCCCGCGACGCGATGGCCCGCCGTGGCGACATC
TCCCCGGAGTCCATCTTGCGCAGCCGCGACCTGGTGGACATCGCTGGCCGCGCCGAACGAGACCGCGTCGGCGCGCTACA
GCAGTTGAACTCCTGCCTGCACCGCTCGCGGGCGCGCATGAAACCTCGGGCTCGCAGGCACATGGCCGAGCAACTTTCGG
ACGCCCTCATGTCCGATACCCAAGATATTGAGACCCAACAGTTCCACCCGCCGCACGCTCCCTCGAAGGGCATCCCGGAC
TACAGGACCTGGCCTGACGAATACCCCGTTGCGGCGGCGTATTCCGACGCAATTCTCACCGCAGCCGATAACGCAGCGAA
CATTCTGCAAATCCGCTTGGACACAATCGTGACCAGGCGGAATCTACGCCAAGCCGCCTGGTCCTGTTGGCTGGCCAAAG
ACACTAACGCTCTGGATATAGCCGAGGACCCGATCGCAGAATGGGAGCAGCTACTAGGTGAAACGTGGACTGATTTGGGG
CTACGCCCCTGGCAGGTAGAGCTGCTGCTCAATGCAGTAGCTCCCGCCGTAGTGGAGGTTTCCGCGACCTAG

Upstream 100 bases:

>100_bases
GGGCACCGCAGTGGCAAACGACTCCTAATAAAACGACTACTAGCACAGGCGAGAGGCTGACAAAGCGAGGCAAGAGGCGA
CCTGACGTATCGTTATAGCC

Downstream 100 bases:

>100_bases
AGTTTTTCCGCGTACCCCACGACGGTCCTGGCGACGGTCTCCGCGTCCAAGCCCAAATCCTCCAGCACCTCGCCACGCGA
GCCATGGGCGAGGAATTCCT

Product: hypothetical protein

Products: NA

Alternate protein names: RNase D [H]

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MSFISVPAAGTPLLRDTPQQIDAVSRVLAAGTGPIAIDTERASAYRYDDRAFLIQLRRHGSGTFLIDPEAEPQATRRMAE
VVNEAEWVLHAAHTDLPCLMALGWRPQVLHDTQIAGQLLGAERIGLSGMLDAYFDIQVPKDKGNADWSRRPLTQAMLNYA
ALDVEWLLELLDCCLEELAKTGRTEWYIQECQHVLASASPLSANDWTDLKGLSSLRRALPRRIAHDLWESRDAMARRGDI
SPESILRSRDLVDIAGRAERDRVGALQQLNSCLHRSRARMKPRARRHMAEQLSDALMSDTQDIETQQFHPPHAPSKGIPD
YRTWPDEYPVAAAYSDAILTAADNAANILQIRLDTIVTRRNLRQAAWSCWLAKDTNALDIAEDPIAEWEQLLGETWTDLG
LRPWQVELLLNAVAPAVVEVSAT

Sequences:

>Translated_423_residues
MSFISVPAAGTPLLRDTPQQIDAVSRVLAAGTGPIAIDTERASAYRYDDRAFLIQLRRHGSGTFLIDPEAEPQATRRMAE
VVNEAEWVLHAAHTDLPCLMALGWRPQVLHDTQIAGQLLGAERIGLSGMLDAYFDIQVPKDKGNADWSRRPLTQAMLNYA
ALDVEWLLELLDCCLEELAKTGRTEWYIQECQHVLASASPLSANDWTDLKGLSSLRRALPRRIAHDLWESRDAMARRGDI
SPESILRSRDLVDIAGRAERDRVGALQQLNSCLHRSRARMKPRARRHMAEQLSDALMSDTQDIETQQFHPPHAPSKGIPD
YRTWPDEYPVAAAYSDAILTAADNAANILQIRLDTIVTRRNLRQAAWSCWLAKDTNALDIAEDPIAEWEQLLGETWTDLG
LRPWQVELLLNAVAPAVVEVSAT
>Mature_422_residues
SFISVPAAGTPLLRDTPQQIDAVSRVLAAGTGPIAIDTERASAYRYDDRAFLIQLRRHGSGTFLIDPEAEPQATRRMAEV
VNEAEWVLHAAHTDLPCLMALGWRPQVLHDTQIAGQLLGAERIGLSGMLDAYFDIQVPKDKGNADWSRRPLTQAMLNYAA
LDVEWLLELLDCCLEELAKTGRTEWYIQECQHVLASASPLSANDWTDLKGLSSLRRALPRRIAHDLWESRDAMARRGDIS
PESILRSRDLVDIAGRAERDRVGALQQLNSCLHRSRARMKPRARRHMAEQLSDALMSDTQDIETQQFHPPHAPSKGIPDY
RTWPDEYPVAAAYSDAILTAADNAANILQIRLDTIVTRRNLRQAAWSCWLAKDTNALDIAEDPIAEWEQLLGETWTDLGL
RPWQVELLLNAVAPAVVEVSAT

Specific function: Cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3' maturation of several stable RNAs [H]

COG id: COG0349

COG function: function code J; Ribonuclease D

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HRDC domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002562
- InterPro:   IPR002121
- InterPro:   IPR010997
- InterPro:   IPR006292
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01612 3_5_exonuc; PF00570 HRDC [H]

EC number: =3.1.13.5 [H]

Molecular weight: Translated: 47284; Mature: 47153

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFISVPAAGTPLLRDTPQQIDAVSRVLAAGTGPIAIDTERASAYRYDDRAFLIQLRRHG
CCEEECCCCCCCHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHCCCCHHHHHHHHHCC
SGTFLIDPEAEPQATRRMAEVVNEAEWVLHAAHTDLPCLMALGWRPQVLHDTQIAGQLLG
CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHH
AERIGLSGMLDAYFDIQVPKDKGNADWSRRPLTQAMLNYAALDVEWLLELLDCCLEELAK
HHHCCHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
TGRTEWYIQECQHVLASASPLSANDWTDLKGLSSLRRALPRRIAHDLWESRDAMARRGDI
CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SPESILRSRDLVDIAGRAERDRVGALQQLNSCLHRSRARMKPRARRHMAEQLSDALMSDT
CHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
QDIETQQFHPPHAPSKGIPDYRTWPDEYPVAAAYSDAILTAADNAANILQIRLDTIVTRR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHEEECCCCHHHHHHHHHHHHHHH
NLRQAAWSCWLAKDTNALDIAEDPIAEWEQLLGETWTDLGLRPWQVELLLNAVAPAVVEV
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHEEE
SAT
ECC
>Mature Secondary Structure 
SFISVPAAGTPLLRDTPQQIDAVSRVLAAGTGPIAIDTERASAYRYDDRAFLIQLRRHG
CEEECCCCCCCHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHCCCCHHHHHHHHHCC
SGTFLIDPEAEPQATRRMAEVVNEAEWVLHAAHTDLPCLMALGWRPQVLHDTQIAGQLLG
CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHH
AERIGLSGMLDAYFDIQVPKDKGNADWSRRPLTQAMLNYAALDVEWLLELLDCCLEELAK
HHHCCHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
TGRTEWYIQECQHVLASASPLSANDWTDLKGLSSLRRALPRRIAHDLWESRDAMARRGDI
CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SPESILRSRDLVDIAGRAERDRVGALQQLNSCLHRSRARMKPRARRHMAEQLSDALMSDT
CHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
QDIETQQFHPPHAPSKGIPDYRTWPDEYPVAAAYSDAILTAADNAANILQIRLDTIVTRR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHEEECCCCHHHHHHHHHHHHHHH
NLRQAAWSCWLAKDTNALDIAEDPIAEWEQLLGETWTDLGLRPWQVELLLNAVAPAVVEV
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHEEE
SAT
ECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]