| Definition | Corynebacterium jeikeium K411, complete genome. |
|---|---|
| Accession | NC_007164 |
| Length | 2,462,499 |
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The map label for this gene is fadD3 [C]
Identifier: 68535669
GI number: 68535669
Start: 722911
End: 724749
Strand: Direct
Name: fadD3 [C]
Synonym: jk0597
Alternate gene names: 68535669
Gene position: 722911-724749 (Clockwise)
Preceding gene: 68535667
Following gene: 68535670
Centisome position: 29.36
GC content: 61.61
Gene sequence:
>1839_bases ATGACGGAGTACACCTCTGAAGCCCTGTACACGATCGACGAGCACGAGACCTGCCTAACGGCAGTTCGTGACCTCGGCAC CGAATCCCCAGACGGGGTGCTGTTTAAGCGTCCGAAGAACTTCGACTGGGTGGACGTCACCGTTTCCCAGTTCCTGGACG ATGTGTACTCGGTAGCCAAGGGTCTGGTTGCCAACGGTATCGAGCAGGGTGACCGCGTGGTCATCATGTCCGACACGCGC TACGAGTGGACCGTGCTGGACTACGCCATCTGGGCTGCCGGCGGCATCACCGTGCCGATCTACCCATCTTCTTCCACCTC CCAGTGTGAGTGGATCGTGGGGAACTCCGGTGCGAAGCTGGCGATCTCCGAAAAGTCCGGCCACACTACCCGCCTGAAGA CGTTCGTTAAGGAAGGCGACCGCCCAGAGGGTGATAGTTCCGCGCACCTCAACCGCGTGCTGGAGATCAACAGCGGCGCC ATCGACATCCTGGTTAACGACGGCAAGGAAGCTGGCATCGGGCAGGACGTCCTGGAAGAGCGCATCGCCAACACCCGCCA CGATGACGTCGCCTCCATCGTTTACACCTCCGGCACCACCGGCCGTCCGAAGGGCTGCAAGCTGACCCACCACAATTGGC TGGCTGAGGCCCGTGCCATCCTGACCCACCCGGTCGGCCGCGCCGCTGCTTTCGGTTACCGCAAGCTGACGTTCCTGCCG CTCGCTCACGTGTTCTCCCGCGCGATGGCACACGCTGCCACCGTCGGCGGCGCTACCCAGACCCACTGGAGCGACATGAG TACCCTGGTTGCCGAGTTCCAGCGCACCAAGCCCAACCTGATCTGCTCTGTGCCGCGCATCTTTGAGAAGGTTCACGCGG GTGTGAAGTCTAAGGCCACGGACGGCGGTGGCGTCAAGGCCAAGATCTTCAACTTCGCAGAGCGCGCCGCAGTTGACTAC TCGAAGGCTCTCGATACCGACGAGGGACCTTCGCTGAAGCAGAAGATCGACCGCGCCATCGGTGACAAGCTGGTCTACTC CAAGGTGCGCGAGGCTATGGGCGGCGAGCTGGATTACGCGATCTCCGGCGGTTCCGCACTGAACCCGGAGCTCATGCACT TCTTCCGTGGCGTGGGCGTGAACCTGTACGAGGGCTACGGCCTGACCGAGTGCACCGCCGCAGCCTGCACTAACTTCGCC CCGGACAACATTATCGGCACCGTCGGCCGCCCGTTGGGTGGCATCACCGTCAAGATCGCCGATGACGGCGAGATCCTGCT GAAGGGCGACATGGTTTTCGCTGGCTACTGGGAGAACGAGGAAGCCACCGCGGAATCCTTCACCGAAGACGGCTTTTACC GCACGGGCGACCTGGGCAAGCTGCTGCCCACCGGCCACCTGAAGATCACTGGCCGCAAGAAGGAAATCATCGTCACCGCT GGCGGCAAGAACGTCTCGCCTGGTCCGATGGAGGACATCCTGCGCTCCGCCCCGCTGATCTCCCAGGCCATGGTCGTCGG TGATGACCAGAAGTTCGTTGGCGCCCTGATCTCCCTGGACGAGGAAGCCACCAAGAAGTGGAAGGAAAACAACGGCATCG CCGAGAACGTCTCCATCCGCGAGCTCGCGAAGAACCCGGTTCTGCGCTCCGAGATCCAGGATGCGATCAACGAGGCCAAC GCCACAGTTTCTCACGCAGAGGGCATCAAGAAGTTCCGTATCGTCCACCGCGACTTCACCGAGGAGAACGACGAAGTCAC CCCGTCGCTGAAGTTGAAGCGCTTCGTTGTGGCGAAGAACTTCGCCGACGATATCGCCTGGATTTACAACTCAAAGTAA
Upstream 100 bases:
>100_bases AATCACGTTGAAGTGACGGGCGATCCAACCCAAGATGCGCCCGTTTTTCATGTAACGAACCAGGTCAGGCAACTGTCAGG ACATGAGCAAAGGGAGCAGC
Downstream 100 bases:
>100_bases GTTAAGAAATCCACTCCACGACACCGGCCACGCCTCCGCGTGTGGCCGGTGTTCTTGTTTTAGAGTTGTCTGCGGTATCA ACCAAGACATGGGCTTTGAC
Product: acyl-CoA synthetase
Products: NA
Alternate protein names: Long-chain acyl-CoA synthetase; LACS [H]
Number of amino acids: Translated: 612; Mature: 611
Protein sequence:
>612_residues MTEYTSEALYTIDEHETCLTAVRDLGTESPDGVLFKRPKNFDWVDVTVSQFLDDVYSVAKGLVANGIEQGDRVVIMSDTR YEWTVLDYAIWAAGGITVPIYPSSSTSQCEWIVGNSGAKLAISEKSGHTTRLKTFVKEGDRPEGDSSAHLNRVLEINSGA IDILVNDGKEAGIGQDVLEERIANTRHDDVASIVYTSGTTGRPKGCKLTHHNWLAEARAILTHPVGRAAAFGYRKLTFLP LAHVFSRAMAHAATVGGATQTHWSDMSTLVAEFQRTKPNLICSVPRIFEKVHAGVKSKATDGGGVKAKIFNFAERAAVDY SKALDTDEGPSLKQKIDRAIGDKLVYSKVREAMGGELDYAISGGSALNPELMHFFRGVGVNLYEGYGLTECTAAACTNFA PDNIIGTVGRPLGGITVKIADDGEILLKGDMVFAGYWENEEATAESFTEDGFYRTGDLGKLLPTGHLKITGRKKEIIVTA GGKNVSPGPMEDILRSAPLISQAMVVGDDQKFVGALISLDEEATKKWKENNGIAENVSIRELAKNPVLRSEIQDAINEAN ATVSHAEGIKKFRIVHRDFTEENDEVTPSLKLKRFVVAKNFADDIAWIYNSK
Sequences:
>Translated_612_residues MTEYTSEALYTIDEHETCLTAVRDLGTESPDGVLFKRPKNFDWVDVTVSQFLDDVYSVAKGLVANGIEQGDRVVIMSDTR YEWTVLDYAIWAAGGITVPIYPSSSTSQCEWIVGNSGAKLAISEKSGHTTRLKTFVKEGDRPEGDSSAHLNRVLEINSGA IDILVNDGKEAGIGQDVLEERIANTRHDDVASIVYTSGTTGRPKGCKLTHHNWLAEARAILTHPVGRAAAFGYRKLTFLP LAHVFSRAMAHAATVGGATQTHWSDMSTLVAEFQRTKPNLICSVPRIFEKVHAGVKSKATDGGGVKAKIFNFAERAAVDY SKALDTDEGPSLKQKIDRAIGDKLVYSKVREAMGGELDYAISGGSALNPELMHFFRGVGVNLYEGYGLTECTAAACTNFA PDNIIGTVGRPLGGITVKIADDGEILLKGDMVFAGYWENEEATAESFTEDGFYRTGDLGKLLPTGHLKITGRKKEIIVTA GGKNVSPGPMEDILRSAPLISQAMVVGDDQKFVGALISLDEEATKKWKENNGIAENVSIRELAKNPVLRSEIQDAINEAN ATVSHAEGIKKFRIVHRDFTEENDEVTPSLKLKRFVVAKNFADDIAWIYNSK >Mature_611_residues TEYTSEALYTIDEHETCLTAVRDLGTESPDGVLFKRPKNFDWVDVTVSQFLDDVYSVAKGLVANGIEQGDRVVIMSDTRY EWTVLDYAIWAAGGITVPIYPSSSTSQCEWIVGNSGAKLAISEKSGHTTRLKTFVKEGDRPEGDSSAHLNRVLEINSGAI DILVNDGKEAGIGQDVLEERIANTRHDDVASIVYTSGTTGRPKGCKLTHHNWLAEARAILTHPVGRAAAFGYRKLTFLPL AHVFSRAMAHAATVGGATQTHWSDMSTLVAEFQRTKPNLICSVPRIFEKVHAGVKSKATDGGGVKAKIFNFAERAAVDYS KALDTDEGPSLKQKIDRAIGDKLVYSKVREAMGGELDYAISGGSALNPELMHFFRGVGVNLYEGYGLTECTAAACTNFAP DNIIGTVGRPLGGITVKIADDGEILLKGDMVFAGYWENEEATAESFTEDGFYRTGDLGKLLPTGHLKITGRKKEIIVTAG GKNVSPGPMEDILRSAPLISQAMVVGDDQKFVGALISLDEEATKKWKENNGIAENVSIRELAKNPVLRSEIQDAINEANA TVSHAEGIKKFRIVHRDFTEENDEVTPSLKLKRFVVAKNFADDIAWIYNSK
Specific function: Esterification, Concomitant With Transport, Of Exogenous Long-Chain Fatty Acids Into Metabolically Active CoA Thioesters For Subsequent Degradation Or Incorporation Into Phospholipids. [C]
COG id: COG1022
COG function: function code I; Long-chain acyl-CoA synthetases (AMP-forming)
Gene ontology:
Cell location: Partially Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI83745141, Length=603, Percent_Identity=28.6898839137645, Blast_Score=228, Evalue=1e-59, Organism=Homo sapiens, GI27477105, Length=618, Percent_Identity=27.831715210356, Blast_Score=216, Evalue=5e-56, Organism=Homo sapiens, GI40807491, Length=623, Percent_Identity=26.9662921348315, Blast_Score=205, Evalue=1e-52, Organism=Homo sapiens, GI42794756, Length=619, Percent_Identity=27.6252019386107, Blast_Score=202, Evalue=8e-52, Organism=Homo sapiens, GI42794760, Length=619, Percent_Identity=27.6252019386107, Blast_Score=202, Evalue=9e-52, Organism=Homo sapiens, GI42794758, Length=619, Percent_Identity=27.6252019386107, Blast_Score=202, Evalue=9e-52, Organism=Homo sapiens, GI57165412, Length=611, Percent_Identity=27.3322422258593, Blast_Score=202, Evalue=1e-51, Organism=Homo sapiens, GI57165410, Length=609, Percent_Identity=27.0935960591133, Blast_Score=200, Evalue=4e-51, Organism=Homo sapiens, GI12669909, Length=638, Percent_Identity=25.3918495297806, Blast_Score=181, Evalue=2e-45, Organism=Homo sapiens, GI4758332, Length=638, Percent_Identity=25.3918495297806, Blast_Score=181, Evalue=2e-45, Organism=Homo sapiens, GI42794754, Length=631, Percent_Identity=24.7226624405705, Blast_Score=153, Evalue=4e-37, Organism=Homo sapiens, GI42794752, Length=631, Percent_Identity=24.7226624405705, Blast_Score=153, Evalue=4e-37, Organism=Homo sapiens, GI156151445, Length=168, Percent_Identity=29.7619047619048, Blast_Score=73, Evalue=8e-13, Organism=Homo sapiens, GI42544132, Length=191, Percent_Identity=27.7486910994764, Blast_Score=69, Evalue=2e-11, Organism=Homo sapiens, GI122937307, Length=191, Percent_Identity=28.7958115183246, Blast_Score=69, Evalue=2e-11, Organism=Escherichia coli, GI1788107, Length=480, Percent_Identity=25.2083333333333, Blast_Score=107, Evalue=3e-24, Organism=Escherichia coli, GI145693145, Length=170, Percent_Identity=34.1176470588235, Blast_Score=89, Evalue=7e-19, Organism=Escherichia coli, GI1788595, Length=200, Percent_Identity=28.5, Blast_Score=72, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17556552, Length=453, Percent_Identity=30.9050772626932, Blast_Score=200, Evalue=2e-51, Organism=Caenorhabditis elegans, GI17564090, Length=544, Percent_Identity=27.7573529411765, Blast_Score=197, Evalue=1e-50, Organism=Caenorhabditis elegans, GI17541856, Length=602, Percent_Identity=26.9102990033223, Blast_Score=194, Evalue=2e-49, Organism=Caenorhabditis elegans, GI17510401, Length=560, Percent_Identity=28.5714285714286, Blast_Score=194, Evalue=2e-49, Organism=Caenorhabditis elegans, GI193204819, Length=630, Percent_Identity=26.5079365079365, Blast_Score=179, Evalue=5e-45, Organism=Caenorhabditis elegans, GI25147511, Length=624, Percent_Identity=23.7179487179487, Blast_Score=159, Evalue=5e-39, Organism=Caenorhabditis elegans, GI17553312, Length=596, Percent_Identity=24.496644295302, Blast_Score=140, Evalue=2e-33, Organism=Caenorhabditis elegans, GI17558820, Length=513, Percent_Identity=24.9512670565302, Blast_Score=128, Evalue=8e-30, Organism=Caenorhabditis elegans, GI32563687, Length=445, Percent_Identity=25.1685393258427, Blast_Score=119, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17531443, Length=521, Percent_Identity=23.4165067178503, Blast_Score=100, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17559526, Length=344, Percent_Identity=27.6162790697674, Blast_Score=98, Evalue=1e-20, Organism=Caenorhabditis elegans, GI71994694, Length=256, Percent_Identity=29.6875, Blast_Score=81, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71994690, Length=256, Percent_Identity=29.6875, Blast_Score=81, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71994703, Length=256, Percent_Identity=29.6875, Blast_Score=81, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560308, Length=214, Percent_Identity=28.5046728971963, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6320852, Length=581, Percent_Identity=26.6781411359725, Blast_Score=172, Evalue=1e-43, Organism=Saccharomyces cerevisiae, GI6322182, Length=457, Percent_Identity=31.0722100656455, Blast_Score=165, Evalue=2e-41, Organism=Saccharomyces cerevisiae, GI6323903, Length=667, Percent_Identity=24.4377811094453, Blast_Score=163, Evalue=7e-41, Organism=Saccharomyces cerevisiae, GI6324893, Length=617, Percent_Identity=26.0940032414911, Blast_Score=159, Evalue=1e-39, Organism=Saccharomyces cerevisiae, GI6319699, Length=170, Percent_Identity=34.7058823529412, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI17933690, Length=605, Percent_Identity=27.603305785124, Blast_Score=221, Evalue=2e-57, Organism=Drosophila melanogaster, GI19921316, Length=636, Percent_Identity=25.1572327044025, Blast_Score=209, Evalue=3e-54, Organism=Drosophila melanogaster, GI281366413, Length=573, Percent_Identity=27.2251308900524, Blast_Score=205, Evalue=6e-53, Organism=Drosophila melanogaster, GI24666501, Length=577, Percent_Identity=27.0363951473137, Blast_Score=205, Evalue=7e-53, Organism=Drosophila melanogaster, GI24666497, Length=577, Percent_Identity=27.0363951473137, Blast_Score=205, Evalue=7e-53, Organism=Drosophila melanogaster, GI62471689, Length=645, Percent_Identity=24.8062015503876, Blast_Score=162, Evalue=7e-40, Organism=Drosophila melanogaster, GI62471679, Length=641, Percent_Identity=24.804992199688, Blast_Score=162, Evalue=7e-40, Organism=Drosophila melanogaster, GI62471683, Length=641, Percent_Identity=24.804992199688, Blast_Score=162, Evalue=7e-40, Organism=Drosophila melanogaster, GI62471685, Length=641, Percent_Identity=24.804992199688, Blast_Score=162, Evalue=7e-40, Organism=Drosophila melanogaster, GI24586636, Length=641, Percent_Identity=24.804992199688, Blast_Score=162, Evalue=7e-40, Organism=Drosophila melanogaster, GI62471681, Length=641, Percent_Identity=24.804992199688, Blast_Score=162, Evalue=8e-40, Organism=Drosophila melanogaster, GI62471687, Length=641, Percent_Identity=24.804992199688, Blast_Score=162, Evalue=8e-40, Organism=Drosophila melanogaster, GI24586634, Length=641, Percent_Identity=24.804992199688, Blast_Score=162, Evalue=8e-40, Organism=Drosophila melanogaster, GI22026970, Length=641, Percent_Identity=24.804992199688, Blast_Score=162, Evalue=8e-40, Organism=Drosophila melanogaster, GI24581924, Length=187, Percent_Identity=31.5508021390374, Blast_Score=80, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.3 [H]
Molecular weight: Translated: 66611; Mature: 66480
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEYTSEALYTIDEHETCLTAVRDLGTESPDGVLFKRPKNFDWVDVTVSQFLDDVYSVAK CCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHH GLVANGIEQGDRVVIMSDTRYEWTVLDYAIWAAGGITVPIYPSSSTSQCEWIVGNSGAKL HHHHHCCCCCCEEEEEECCCEEEEEEHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCEE AISEKSGHTTRLKTFVKEGDRPEGDSSAHLNRVLEINSGAIDILVNDGKEAGIGQDVLEE EEECCCCCHHHHHHHHHCCCCCCCCCHHHHHEEEEECCCEEEEEEECCCCCCCCHHHHHH RIANTRHDDVASIVYTSGTTGRPKGCKLTHHNWLAEARAILTHPVGRAAAFGYRKLTFLP HHHCCCCCCCEEEEEECCCCCCCCCCEECCHHHHHHHHHHHHCCCCHHHHHCCHHHHHHH LAHVFSRAMAHAATVGGATQTHWSDMSTLVAEFQRTKPNLICSVPRIFEKVHAGVKSKAT HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCC DGGGVKAKIFNFAERAAVDYSKALDTDEGPSLKQKIDRAIGDKLVYSKVREAMGGELDYA CCCCEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE ISGGSALNPELMHFFRGVGVNLYEGYGLTECTAAACTNFAPDNIIGTVGRPLGGITVKIA ECCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEEE DDGEILLKGDMVFAGYWENEEATAESFTEDGFYRTGDLGKLLPTGHLKITGRKKEIIVTA CCCCEEEECCEEEEEECCCCCHHHHHHHCCCCEEECCCCCCCCCCCEEEECCCEEEEEEE GGKNVSPGPMEDILRSAPLISQAMVVGDDQKFVGALISLDEEATKKWKENNGIAENVSIR CCCCCCCCCHHHHHHCCCHHHHHEEECCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHH ELAKNPVLRSEIQDAINEANATVSHAEGIKKFRIVHRDFTEENDEVTPSLKLKRFVVAKN HHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH FADDIAWIYNSK HHHHHHEEECCC >Mature Secondary Structure TEYTSEALYTIDEHETCLTAVRDLGTESPDGVLFKRPKNFDWVDVTVSQFLDDVYSVAK CCCCCCCEEEECCHHHHHHHHHHCCCCCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHH GLVANGIEQGDRVVIMSDTRYEWTVLDYAIWAAGGITVPIYPSSSTSQCEWIVGNSGAKL HHHHHCCCCCCEEEEEECCCEEEEEEHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCEE AISEKSGHTTRLKTFVKEGDRPEGDSSAHLNRVLEINSGAIDILVNDGKEAGIGQDVLEE EEECCCCCHHHHHHHHHCCCCCCCCCHHHHHEEEEECCCEEEEEEECCCCCCCCHHHHHH RIANTRHDDVASIVYTSGTTGRPKGCKLTHHNWLAEARAILTHPVGRAAAFGYRKLTFLP HHHCCCCCCCEEEEEECCCCCCCCCCEECCHHHHHHHHHHHHCCCCHHHHHCCHHHHHHH LAHVFSRAMAHAATVGGATQTHWSDMSTLVAEFQRTKPNLICSVPRIFEKVHAGVKSKAT HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCC DGGGVKAKIFNFAERAAVDYSKALDTDEGPSLKQKIDRAIGDKLVYSKVREAMGGELDYA CCCCEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE ISGGSALNPELMHFFRGVGVNLYEGYGLTECTAAACTNFAPDNIIGTVGRPLGGITVKIA ECCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEEE DDGEILLKGDMVFAGYWENEEATAESFTEDGFYRTGDLGKLLPTGHLKITGRKKEIIVTA CCCCEEEECCEEEEEECCCCCHHHHHHHCCCCEEECCCCCCCCCCCEEEECCCEEEEEEE GGKNVSPGPMEDILRSAPLISQAMVVGDDQKFVGALISLDEEATKKWKENNGIAENVSIR CCCCCCCCCHHHHHHCCCHHHHHEEECCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHH ELAKNPVLRSEIQDAINEANATVSHAEGIKKFRIVHRDFTEENDEVTPSLKLKRFVVAKN HHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH FADDIAWIYNSK HHHHHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]