Click here to switch to the map view.

The map label for this gene is rbcR [H]

Identifier: 68535480

GI number: 68535480

Start: 492552

End: 493412

Strand: Direct

Name: rbcR [H]

Synonym: jk0410

Alternate gene names: 68535480

Gene position: 492552-493412 (Clockwise)

Preceding gene: 68535473

Following gene: 68535481

Centisome position: 20.0

GC content: 51.57

Gene sequence:

>861_bases
ATGATTGCTCAGACAGGAAATCTGCGCCAATGGCAGTATTTCGTGGCTTTAGCGGAGACCGGTAGTTTTACAGCGGCGGC
AGCGCGACTGGGAGTGAGTCAGCCGCCTGTCTCCAATGCCATTAAGCGCTTAGAAGCTGGTGTAGGTACACCGCTATTTA
TCCGAGGGGCGGGGGAAGTGAAACTAACCGAGGCAGGGTTGACCTTGCTTCCATATGCCCGGGTGATTAATCGCGATCTT
CAGACTATGCATTCGATGATTGACGGTATCCGAAGTGGTGCGCAAAGCGGGTTTCGTTTGGCCATCAGTAGTGCGCTTCC
AAGCGAGATAGGATCGCGTATTGCAGCAAAGGCACAGCAGCATGATGGAGTAGTTTTGTCGTCACTGCCTTCTGTTGAGA
TTCTTGCCCGTGTTGAAGAAGGCGCTATTCATGCGGGGCTTGTTCAAGCTCCGGTTCCCTTGGGTATTCACCGCAGTGCG
AGGCAGTTTTCTCTGTCACGTGATCTAGTGGTGCCGCCGGGGTATTCAAGGTTGGATAAGACCTTGTCTCAATTGAATCT
GCTGGTGGAGAACCTGAATGACAATTCAAGTGCAGCCAGTGGTTTGGCGAGAGAGCTATTTCGGTCGGGTGTGTCTTGCG
AAATTAATGATTCAGAGGATGCTCTAGGTAGGGGCTTATTGATTGGAAGAGGGGAGGGGATGTCTTTGGTATTTCGCGGT
TTTCACCAGTTTGACAATGCTATTGAGCTTCCTTCCCGTTTCGATTTTTCCGTGGATGTAGTGGTTCGCCGAGGTGGGAT
GGACAATGGCGCCGAGGCCATGGCGGTCGCCGAAAGAATTTGTCGAAGGATTAACCAATGA

Upstream 100 bases:

>100_bases
CCTTTTTGTTTATCGACGCCACCGCGACGGTGTTGCTCAAGCCAAAGACATCATTTTACGCTGCAGTGGTGCGAACTCGT
GCTCCACTATGCTGAGACCC

Downstream 100 bases:

>100_bases
CTGCACGGATGGAGATGGCCCTGGAAAACGTGTTGACGCGGTCGGGGTGTGAGGGATGGTGGTGTGCATCGCGACTGCAC
GATGGGGTGACTATCGGACG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MIAQTGNLRQWQYFVALAETGSFTAAAARLGVSQPPVSNAIKRLEAGVGTPLFIRGAGEVKLTEAGLTLLPYARVINRDL
QTMHSMIDGIRSGAQSGFRLAISSALPSEIGSRIAAKAQQHDGVVLSSLPSVEILARVEEGAIHAGLVQAPVPLGIHRSA
RQFSLSRDLVVPPGYSRLDKTLSQLNLLVENLNDNSSAASGLARELFRSGVSCEINDSEDALGRGLLIGRGEGMSLVFRG
FHQFDNAIELPSRFDFSVDVVVRRGGMDNGAEAMAVAERICRRINQ

Sequences:

>Translated_286_residues
MIAQTGNLRQWQYFVALAETGSFTAAAARLGVSQPPVSNAIKRLEAGVGTPLFIRGAGEVKLTEAGLTLLPYARVINRDL
QTMHSMIDGIRSGAQSGFRLAISSALPSEIGSRIAAKAQQHDGVVLSSLPSVEILARVEEGAIHAGLVQAPVPLGIHRSA
RQFSLSRDLVVPPGYSRLDKTLSQLNLLVENLNDNSSAASGLARELFRSGVSCEINDSEDALGRGLLIGRGEGMSLVFRG
FHQFDNAIELPSRFDFSVDVVVRRGGMDNGAEAMAVAERICRRINQ
>Mature_286_residues
MIAQTGNLRQWQYFVALAETGSFTAAAARLGVSQPPVSNAIKRLEAGVGTPLFIRGAGEVKLTEAGLTLLPYARVINRDL
QTMHSMIDGIRSGAQSGFRLAISSALPSEIGSRIAAKAQQHDGVVLSSLPSVEILARVEEGAIHAGLVQAPVPLGIHRSA
RQFSLSRDLVVPPGYSRLDKTLSQLNLLVENLNDNSSAASGLARELFRSGVSCEINDSEDALGRGLLIGRGEGMSLVFRG
FHQFDNAIELPSRFDFSVDVVVRRGGMDNGAEAMAVAERICRRINQ

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=100, Percent_Identity=37, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI2367136, Length=143, Percent_Identity=32.1678321678322, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30603; Mature: 30603

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAQTGNLRQWQYFVALAETGSFTAAAARLGVSQPPVSNAIKRLEAGVGTPLFIRGAGEV
CCCCCCCCCCEEEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEECCCCE
KLTEAGLTLLPYARVINRDLQTMHSMIDGIRSGAQSGFRLAISSALPSEIGSRIAAKAQQ
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCHHHHHHHHHHHHHH
HDGVVLSSLPSVEILARVEEGAIHAGLVQAPVPLGIHRSARQFSLSRDLVVPPGYSRLDK
CCCEEEECCCCHHHHHHHHCCCHHHCHHCCCCCCCCCCHHHHHHCCCCEECCCCHHHHHH
TLSQLNLLVENLNDNSSAASGLARELFRSGVSCEINDSEDALGRGLLIGRGEGMSLVFRG
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHCCCEEEECCCCHHHHHHH
FHQFDNAIELPSRFDFSVDVVVRRGGMDNGAEAMAVAERICRRINQ
HHHHCCHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIAQTGNLRQWQYFVALAETGSFTAAAARLGVSQPPVSNAIKRLEAGVGTPLFIRGAGEV
CCCCCCCCCCEEEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEECCCCE
KLTEAGLTLLPYARVINRDLQTMHSMIDGIRSGAQSGFRLAISSALPSEIGSRIAAKAQQ
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCHHHHHHHHHHHHHH
HDGVVLSSLPSVEILARVEEGAIHAGLVQAPVPLGIHRSARQFSLSRDLVVPPGYSRLDK
CCCEEEECCCCHHHHHHHHCCCHHHCHHCCCCCCCCCCHHHHHHCCCCEECCCCHHHHHH
TLSQLNLLVENLNDNSSAASGLARELFRSGVSCEINDSEDALGRGLLIGRGEGMSLVFRG
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHCCCEEEECCCCHHHHHHH
FHQFDNAIELPSRFDFSVDVVVRRGGMDNGAEAMAVAERICRRINQ
HHHHCCHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]