Click here to switch to the map view.

The map label for this gene is sigK [H]

Identifier: 68535087

GI number: 68535087

Start: 29772

End: 30368

Strand: Direct

Name: sigK [H]

Synonym: jk0025

Alternate gene names: 68535087

Gene position: 29772-30368 (Clockwise)

Preceding gene: 68535086

Following gene: 68535088

Centisome position: 1.21

GC content: 59.8

Gene sequence:

>597_bases
ATGAAAACAGTGGCCGTAGTCGATAGAGAAACTCTCGAGAGCTTAATGCTGCTCACCCAGCAGGGTGATGCGGCGGCTTT
CGCACGCCTCTACGACCACATCGCCCCGACTGTTCTGGGCCTCAGCCTGCAGATACTCCACGATCAGGCGCAGGCAGAGG
AAGTCACCCAGGAAGTTTTCATCGAAGTATGGCAGCACGCTGCAGACTTCGCCCCAGCCAAAGGCTCGGCCAAAGCATGG
ATCCTCCGCCGGGCGAGGCTCCGCGCCATTGATCGCGTCCGAAGCGCCATCGCCACCTTGAAACGGGATGACCGGGAGGC
CTTCCTGGTGGCGTCAATAAAAAAAGAAAGCGTGGAAGACGAGGCCTTGAGGAATGTGCAACGTCACGCCGTGCGGACTG
CGCTGGAGATCATGGGCGAGCCGCACAAGACCGCGATTTTGCTGGCCTACTTCGGCGACATGACTCACGCGGAACTGGCG
GAAGCCACCGGCGTACCGCTGGGAACTGCGAAGACGCGCGTGCGTGATGGGCTTCGTAAGCTAGAGAAGATCCTTAAAGA
ACAACGTGACGCACTGGCGGAAGGGGGTGCCCGATGA

Upstream 100 bases:

>100_bases
GTCGAGAACATGATGGAGACCGACGAAAGCATGATGCCGGACCTGCAGGGCAAGCAGAACAAGTAGAAAGCTAGCAGGTC
GTAGGCCCAGGGGCGCTACG

Downstream 100 bases:

>100_bases
AAGACGAAAAGCCGGATTTCGGCGAGCTAGAGGCCGACCTGGCGGACTTGGCCGAACCTGTGGCGCCTCCGCCGCAGTTG
AAGTCGAACATCATGGATGC

Product: ECF family RNA polymerase sigma factor K

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MKTVAVVDRETLESLMLLTQQGDAAAFARLYDHIAPTVLGLSLQILHDQAQAEEVTQEVFIEVWQHAADFAPAKGSAKAW
ILRRARLRAIDRVRSAIATLKRDDREAFLVASIKKESVEDEALRNVQRHAVRTALEIMGEPHKTAILLAYFGDMTHAELA
EATGVPLGTAKTRVRDGLRKLEKILKEQRDALAEGGAR

Sequences:

>Translated_198_residues
MKTVAVVDRETLESLMLLTQQGDAAAFARLYDHIAPTVLGLSLQILHDQAQAEEVTQEVFIEVWQHAADFAPAKGSAKAW
ILRRARLRAIDRVRSAIATLKRDDREAFLVASIKKESVEDEALRNVQRHAVRTALEIMGEPHKTAILLAYFGDMTHAELA
EATGVPLGTAKTRVRDGLRKLEKILKEQRDALAEGGAR
>Mature_198_residues
MKTVAVVDRETLESLMLLTQQGDAAAFARLYDHIAPTVLGLSLQILHDQAQAEEVTQEVFIEVWQHAADFAPAKGSAKAW
ILRRARLRAIDRVRSAIATLKRDDREAFLVASIKKESVEDEALRNVQRHAVRTALEIMGEPHKTAILLAYFGDMTHAELA
EATGVPLGTAKTRVRDGLRKLEKILKEQRDALAEGGAR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 21957; Mature: 21957

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVAVVDRETLESLMLLTQQGDAAAFARLYDHIAPTVLGLSLQILHDQAQAEEVTQEVF
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEVWQHAADFAPAKGSAKAWILRRARLRAIDRVRSAIATLKRDDREAFLVASIKKESVED
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHH
EALRNVQRHAVRTALEIMGEPHKTAILLAYFGDMTHAELAEATGVPLGTAKTRVRDGLRK
HHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
LEKILKEQRDALAEGGAR
HHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKTVAVVDRETLESLMLLTQQGDAAAFARLYDHIAPTVLGLSLQILHDQAQAEEVTQEVF
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEVWQHAADFAPAKGSAKAWILRRARLRAIDRVRSAIATLKRDDREAFLVASIKKESVED
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHH
EALRNVQRHAVRTALEIMGEPHKTAILLAYFGDMTHAELAEATGVPLGTAKTRVRDGLRK
HHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
LEKILKEQRDALAEGGAR
HHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]