| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is yhgF [H]
Identifier: 66768285
GI number: 66768285
Start: 2366623
End: 2368986
Strand: Direct
Name: yhgF [H]
Synonym: XC_1964
Alternate gene names: 66768285
Gene position: 2366623-2368986 (Clockwise)
Preceding gene: 66768284
Following gene: 66768288
Centisome position: 45.97
GC content: 67.55
Gene sequence:
>2364_bases ATGCACGACACCCAGCTTGCCCAGCAGATCGCCCGCACCATCGCCGATGAGATCGGTGCCCAACCCGCCCAGGCGCGCGC CGCCATTGCCCTTCTCGATGAAGGCGCCAGCGTTCCGTTCATCGCGCGCTACCGCAAGGAAGTCACCGGCGGTCTGGACG ACACCCAGCTGCGCAACCTCGAAACGCGCCTGACCTACCTGCGCGAACTGGAAGACCGCCGCGCCGCGATCCTGTCCAGC ATCGGCGAGCAGGGCAAACTCAGCGACGAACTGCGCAGCGAAATCGTCGCCGCCGACACCAAGTCGCGCCTGGAAGACCT GTATCTGCCGTACAAGCCCAAGCGCCGCACGCGTGCGCAGATTGCGCGCGAGGCCGGGCTGGAACCGCTGGCGGACACCT TGCTGGCCGACCCCACCCAGGCGCCGGACACCACCGCAGCGATCTACGTGGATGCCGACAAGGGCGTGGCCGACGTCAAG GCCGCACTGGAAGGCGCCCGCGCGATCCTGATGGAGCGCTGGGGCGAAGACGCCGCGCTGGTCGGCGAACTGCGTAGCTG GTTGAACGACAACGGCGTGATCCGTGCGCGTGTGGCCGAGGGCAAGGAAGAGGCCGGTGCCAAATACCGCGACTACTTCG ACCACGCCGAATCGCTGGCCAGGATTCCCTCGCATCGCCTGCTGGCCTTGTTCCGGGCACGCCGCGAAGAATTTCTCTAC CTGGATCTGGACCCGGGCACCGATGCCGACGCCGGTCACCAGTACGCCGAAGGCCGCGTGGCGCGCAGTGCCGGCATTTC CAACGAAGGCCGCCCGGCCGACCGCTGGTTGCTCGATGCCTGCCGGCTCACCTGGCGCGCCAAGCTGCACATGCACCTGC TGCTGGACCTGTTCAACCAGGCGCGCGAAAAGGCCGAGGCCGAGGCGATTGCGGTGTTCGGCGACAACCTCAAGGACCTG ATGCTGGCGGCGCCCGCCGGCCCGCGCGTGGTGCTGGGCCTGGACCCGGGCATCCGCACGGGCTGCAAGATCGCCGTGGT CGACGCCACCGGCAAGCTGGTAGCCACCGAGACGATCTACCCGCACGAACCCAAGCGGCAGTGGGACCAGTCGCTGCAGA CGCTCAAGAAGCTGTGCCTGCAGCACAACGTGGAGCTGATCGCGATCGGTAACGGTACTGCCAGCCGCGAGACCGACAAG CTTGCCGGCGAGGCAATTGCCTTGTGCGACCGCGCCAAGCTGCAGAAGATCGTGGTCAGCGAAGCCGGCGCATCGGTGTA CTCCGCATCTGAATTCGCCGCCAAGGAATTCCCGAACCTGGATGTCTCGCTGCGCGGTGCGGTGTCGATCGCGCGGCGCC TGCAGGACCCGCTGGCCGAGTTGGTCAAGATCGAGCCCAAGGCAATCGGTGTGGGCCAGTACCAGCACGACGTGGACCAA TATCGCCTGGCCAAGGCGCTGGACGCGCGCGTGGAAGACTGCGTCAACGCCGTGGGCGTGTACGTCAATACCGCCTCGGC GGCCTTGCTGTCACGCGTATCGGGCCTGTCCAGTACGGTGGCGGAAAACATCGTGCGGCATCGCGACGACAACGGCCCGT TCAAGCGCCGCAAGGACCTGCTCAAGGTCCCGCGCCTGGGCGACAAGACCTTCGAACAATGCGCCGGCTTCCTGCGCATT GCCGACGGCGATGAGCCGCTGGATGTGTCGGCGGTGCACCCGGAGGCCTACCCGGTGGTGGAGCGCATCGTCAGCAGCAC CGGCAAGCCAATCAAGGCCTTGCTGGGCGATGGCAGCTTCCTGCGCGCGCTCAAGCCGGAGCAGTTCACCGACGAGCAAT TCGGTGTGCCCACCGTGCGCGACATCCTCAAGGAAATGGAAAAGCCCGGCCGGGACCCGCGCCCGGAATTCAAGGCGGCG CAGTTCGCCGAGGGCATCGAGGACATCAAGCACCTCAAGCCCGGCATGATCCTGGAAGGTGTGGTCAGCAACGTCGCGGC CTTTGGCGCGTTCGTCGACATCGGCGTGCACCAGGATGGCCTGGTCCACATCTCGGCGCTGTCGGACACCTTCGTCAAGG ACCCGCGCGACGTGGTCAAGGCCGGCGACATCGTCAAGGTCAAGGTGCTGGAAGTGGACGTGGCGCGCAAACGCATCGCG CTGACCCGGCGGTTGTCGGATACGCCGCCACCGGCCGACGCGGCCGCGCAGTCACGCGACACACGTGGCGCGGGGCAGGG GCGGCGCGACGGAAGCGGTGGTGGCGGGCGCGGCCCGGCAGCCGGCACTGCCAAGCCGCGGACCAGCGCGCCGCCCGCCA ACAACGCATTGGCCGACGCCTTCGCGCGCGCCAAACGCAGCTGA
Upstream 100 bases:
>100_bases GTCGGCATAGGTTTACGGTGGTCCTGTCAACGGGTTTCCGCGGCGCCCCGGCACTGCGAAAATGCATTTTTGACAGTGAA GCGGTTCCAACCGCGCCGCC
Downstream 100 bases:
>100_bases TCACAACGCACCCTGGCCCGCGCCAGGGTGCGTTGTTCAGGCGGATGGGTCGGTGCGTACCGCACCGGCGGGCAGCACCA GGCGTTCGATCAGGTCGATC
Product: transcription-related protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 787; Mature: 787
Protein sequence:
>787_residues MHDTQLAQQIARTIADEIGAQPAQARAAIALLDEGASVPFIARYRKEVTGGLDDTQLRNLETRLTYLRELEDRRAAILSS IGEQGKLSDELRSEIVAADTKSRLEDLYLPYKPKRRTRAQIAREAGLEPLADTLLADPTQAPDTTAAIYVDADKGVADVK AALEGARAILMERWGEDAALVGELRSWLNDNGVIRARVAEGKEEAGAKYRDYFDHAESLARIPSHRLLALFRARREEFLY LDLDPGTDADAGHQYAEGRVARSAGISNEGRPADRWLLDACRLTWRAKLHMHLLLDLFNQAREKAEAEAIAVFGDNLKDL MLAAPAGPRVVLGLDPGIRTGCKIAVVDATGKLVATETIYPHEPKRQWDQSLQTLKKLCLQHNVELIAIGNGTASRETDK LAGEAIALCDRAKLQKIVVSEAGASVYSASEFAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVDQ YRLAKALDARVEDCVNAVGVYVNTASAALLSRVSGLSSTVAENIVRHRDDNGPFKRRKDLLKVPRLGDKTFEQCAGFLRI ADGDEPLDVSAVHPEAYPVVERIVSSTGKPIKALLGDGSFLRALKPEQFTDEQFGVPTVRDILKEMEKPGRDPRPEFKAA QFAEGIEDIKHLKPGMILEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVARKRIA LTRRLSDTPPPADAAAQSRDTRGAGQGRRDGSGGGGRGPAAGTAKPRTSAPPANNALADAFARAKRS
Sequences:
>Translated_787_residues MHDTQLAQQIARTIADEIGAQPAQARAAIALLDEGASVPFIARYRKEVTGGLDDTQLRNLETRLTYLRELEDRRAAILSS IGEQGKLSDELRSEIVAADTKSRLEDLYLPYKPKRRTRAQIAREAGLEPLADTLLADPTQAPDTTAAIYVDADKGVADVK AALEGARAILMERWGEDAALVGELRSWLNDNGVIRARVAEGKEEAGAKYRDYFDHAESLARIPSHRLLALFRARREEFLY LDLDPGTDADAGHQYAEGRVARSAGISNEGRPADRWLLDACRLTWRAKLHMHLLLDLFNQAREKAEAEAIAVFGDNLKDL MLAAPAGPRVVLGLDPGIRTGCKIAVVDATGKLVATETIYPHEPKRQWDQSLQTLKKLCLQHNVELIAIGNGTASRETDK LAGEAIALCDRAKLQKIVVSEAGASVYSASEFAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVDQ YRLAKALDARVEDCVNAVGVYVNTASAALLSRVSGLSSTVAENIVRHRDDNGPFKRRKDLLKVPRLGDKTFEQCAGFLRI ADGDEPLDVSAVHPEAYPVVERIVSSTGKPIKALLGDGSFLRALKPEQFTDEQFGVPTVRDILKEMEKPGRDPRPEFKAA QFAEGIEDIKHLKPGMILEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVARKRIA LTRRLSDTPPPADAAAQSRDTRGAGQGRRDGSGGGGRGPAAGTAKPRTSAPPANNALADAFARAKRS >Mature_787_residues MHDTQLAQQIARTIADEIGAQPAQARAAIALLDEGASVPFIARYRKEVTGGLDDTQLRNLETRLTYLRELEDRRAAILSS IGEQGKLSDELRSEIVAADTKSRLEDLYLPYKPKRRTRAQIAREAGLEPLADTLLADPTQAPDTTAAIYVDADKGVADVK AALEGARAILMERWGEDAALVGELRSWLNDNGVIRARVAEGKEEAGAKYRDYFDHAESLARIPSHRLLALFRARREEFLY LDLDPGTDADAGHQYAEGRVARSAGISNEGRPADRWLLDACRLTWRAKLHMHLLLDLFNQAREKAEAEAIAVFGDNLKDL MLAAPAGPRVVLGLDPGIRTGCKIAVVDATGKLVATETIYPHEPKRQWDQSLQTLKKLCLQHNVELIAIGNGTASRETDK LAGEAIALCDRAKLQKIVVSEAGASVYSASEFAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVDQ YRLAKALDARVEDCVNAVGVYVNTASAALLSRVSGLSSTVAENIVRHRDDNGPFKRRKDLLKVPRLGDKTFEQCAGFLRI ADGDEPLDVSAVHPEAYPVVERIVSSTGKPIKALLGDGSFLRALKPEQFTDEQFGVPTVRDILKEMEKPGRDPRPEFKAA QFAEGIEDIKHLKPGMILEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVARKRIA LTRRLSDTPPPADAAAQSRDTRGAGQGRRDGSGGGGRGPAAGTAKPRTSAPPANNALADAFARAKRS
Specific function: Unknown
COG id: COG2183
COG function: function code K; Transcriptional accessory protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Homo sapiens, GI221136781, Length=798, Percent_Identity=31.9548872180451, Blast_Score=354, Evalue=2e-97, Organism=Homo sapiens, GI27597090, Length=245, Percent_Identity=30.2040816326531, Blast_Score=77, Evalue=5e-14, Organism=Escherichia coli, GI87082262, Length=772, Percent_Identity=62.6943005181347, Blast_Score=924, Evalue=0.0, Organism=Escherichia coli, GI1787140, Length=99, Percent_Identity=37.3737373737374, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17511129, Length=717, Percent_Identity=27.6150627615063, Blast_Score=216, Evalue=4e-56, Organism=Caenorhabditis elegans, GI17552892, Length=314, Percent_Identity=27.0700636942675, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI62484314, Length=773, Percent_Identity=32.470892626132, Blast_Score=370, Evalue=1e-102,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR005227 - InterPro: IPR006641 - InterPro: IPR022967 - InterPro: IPR018974 - InterPro: IPR023097 [H]
Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]
EC number: NA
Molecular weight: Translated: 85400; Mature: 85400
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHDTQLAQQIARTIADEIGAQPAQARAAIALLDEGASVPFIARYRKEVTGGLDDTQLRNL CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHEECCCCCCCHHHHHHHHHHCCCCHHHHHHH ETRLTYLRELEDRRAAILSSIGEQGKLSDELRSEIVAADTKSRLEDLYLPYKPKRRTRAQ HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH IAREAGLEPLADTLLADPTQAPDTTAAIYVDADKGVADVKAALEGARAILMERWGEDAAL HHHHCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHH VGELRSWLNDNGVIRARVAEGKEEAGAKYRDYFDHAESLARIPSHRLLALFRARREEFLY HHHHHHHHCCCCEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEE LDLDPGTDADAGHQYAEGRVARSAGISNEGRPADRWLLDACRLTWRAKLHMHLLLDLFNQ EECCCCCCCCCCCHHHHCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AREKAEAEAIAVFGDNLKDLMLAAPAGPRVVLGLDPGIRTGCKIAVVDATGKLVATETIY HHHHHHHHEEEEECCCHHHHHEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEECCCC PHEPKRQWDQSLQTLKKLCLQHNVELIAIGNGTASRETDKLAGEAIALCDRAKLQKIVVS CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH EAGASVYSASEFAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVDQ HCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH YRLAKALDARVEDCVNAVGVYVNTASAALLSRVSGLSSTVAENIVRHRDDNGPFKRRKDL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH LKVPRLGDKTFEQCAGFLRIADGDEPLDVSAVHPEAYPVVERIVSSTGKPIKALLGDGSF HHCCCCCHHHHHHHHCCEEECCCCCCCCCEEECCCHHHHHHHHHHCCCCCHHHHHCCCHH LRALKPEQFTDEQFGVPTVRDILKEMEKPGRDPRPEFKAAQFAEGIEDIKHLKPGMILEG HHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH VVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVARKRIA HHHHHHHHHHHHEECCCCCCCEEEEEHHHHHHCCCHHHHHCCCEEEEEEEEHHHHHHHHH LTRRLSDTPPPADAAAQSRDTRGAGQGRRDGSGGGGRGPAAGTAKPRTSAPPANNALADA HHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH FARAKRS HHHHCCC >Mature Secondary Structure MHDTQLAQQIARTIADEIGAQPAQARAAIALLDEGASVPFIARYRKEVTGGLDDTQLRNL CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHEECCCCCCCHHHHHHHHHHCCCCHHHHHHH ETRLTYLRELEDRRAAILSSIGEQGKLSDELRSEIVAADTKSRLEDLYLPYKPKRRTRAQ HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH IAREAGLEPLADTLLADPTQAPDTTAAIYVDADKGVADVKAALEGARAILMERWGEDAAL HHHHCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHH VGELRSWLNDNGVIRARVAEGKEEAGAKYRDYFDHAESLARIPSHRLLALFRARREEFLY HHHHHHHHCCCCEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEE LDLDPGTDADAGHQYAEGRVARSAGISNEGRPADRWLLDACRLTWRAKLHMHLLLDLFNQ EECCCCCCCCCCCHHHHCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AREKAEAEAIAVFGDNLKDLMLAAPAGPRVVLGLDPGIRTGCKIAVVDATGKLVATETIY HHHHHHHHEEEEECCCHHHHHEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEECCCC PHEPKRQWDQSLQTLKKLCLQHNVELIAIGNGTASRETDKLAGEAIALCDRAKLQKIVVS CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH EAGASVYSASEFAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVDQ HCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH YRLAKALDARVEDCVNAVGVYVNTASAALLSRVSGLSSTVAENIVRHRDDNGPFKRRKDL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH LKVPRLGDKTFEQCAGFLRIADGDEPLDVSAVHPEAYPVVERIVSSTGKPIKALLGDGSF HHCCCCCHHHHHHHHCCEEECCCCCCCCCEEECCCHHHHHHHHHHCCCCCHHHHHCCCHH LRALKPEQFTDEQFGVPTVRDILKEMEKPGRDPRPEFKAAQFAEGIEDIKHLKPGMILEG HHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH VVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVARKRIA HHHHHHHHHHHHEECCCCCCCEEEEEHHHHHHCCCHHHHHCCCEEEEEEEEHHHHHHHHH LTRRLSDTPPPADAAAQSRDTRGAGQGRRDGSGGGGRGPAAGTAKPRTSAPPANNALADA HHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH FARAKRS HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 10493123 [H]