BacMap

Definition	Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome.
Accession	NC_007086
Length	5,148,708

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The map label for this gene is bdhA [H]

Identifier: 66768277

GI number: 66768277

Start: 2360344

End: 2361102

Strand: Reverse

Name: bdhA [H]

Synonym: XC_1956

Alternate gene names: 66768277

Gene position: 2361102-2360344 (Counterclockwise)

Preceding gene: 66768283

Following gene: 66768273

Centisome position: 45.86

GC content: 69.57

Gene sequence:

>759_bases
ATGCGCAGCATCCTGATCACCGGTGCCGGCAGCGGCATCGGCGCCGGCCTGGCCACCGTTCTTGCCGCCGACGGCCACCA
CCTGCTGGTGAGCGACGCCGACCTGGCCGCGGCCGAGCAGACCACCCAGCAGGTGCGTGCGGCCGGCGGATCGGCCGAGG
CCCTGGTACTGGACGTCACCGACGAGCACAGCATTGCCCAGGCACTGGCGGCCGCCGCGCGCGCGCCCGAGGTGTTGGTC
AACAACGCCGGCCTGCAGCACGTTGCGCCGCTGGAGGAGTTCCCGATGCAGCGCTGGGCGCTGCTGGTGGACGTGATGCT
GACCGGTGCCGCACGTCTCAGCCGCGCGGTGCTGCCGGGCATGCGTGCGGGCGGCTACGGGCGCATCGTCAACATCGGCA
GCATCCATTCGCTGGTGGCCAGCCCTTACAAGAGCGCCTACGTGGCTGCCAAGCATGGGCTGATCGGGCTGTCCAAGGTG
CTCGCGCTGGAAACCGCCGACTGCGACATCACCGCCAACACGCTGTGCCCCAGCTATGTGCGCACGCCGCTGGTGGAGCG
GCAGATCGCCGACCAGGCACGCACGCGCGGCATTGCCGAAGACGCGGTGATCCGCGAGGTGATGCTCAAGCCGATGCCCA
AAGGCGCCTTCATCGAGTACGACGAACTGGCCGGCACCGTGGCCTTCCTGATGTCGCACGCGGCGCGTAATCTCACCGGC
CAGGCCATCGCCATCGACGGTGGCTGGACCGCGCAATGA

Upstream 100 bases:

>100_bases
GGGTAACGCGCGCGCGACGCGCAGGCGACCGTTTCAACGTGCTCGGCTACCCTGGCGGCCACTGGCACCGTTTCAGTGCC
GCATTCCACGAGGACACCCG

Downstream 100 bases:

>100_bases
AGCGGTGGCGAAATTTTCACCAGGGCTCTTGACAGCCAGATGGGGCAAGGCCTGCACACGGTTGTCCACAGACTTGCGCA
ACTTCCATCCACAGGGGGTG

Product: D-beta-hydroxybutyrate dehydrogenase

Products: NA

Alternate protein names: BDH; 3-hydroxybutyrate dehydrogenase; 3-HBDH [H]

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MRSILITGAGSGIGAGLATVLAADGHHLLVSDADLAAAEQTTQQVRAAGGSAEALVLDVTDEHSIAQALAAAARAPEVLV
NNAGLQHVAPLEEFPMQRWALLVDVMLTGAARLSRAVLPGMRAGGYGRIVNIGSIHSLVASPYKSAYVAAKHGLIGLSKV
LALETADCDITANTLCPSYVRTPLVERQIADQARTRGIAEDAVIREVMLKPMPKGAFIEYDELAGTVAFLMSHAARNLTG
QAIAIDGGWTAQ

Sequences:

>Translated_252_residues
MRSILITGAGSGIGAGLATVLAADGHHLLVSDADLAAAEQTTQQVRAAGGSAEALVLDVTDEHSIAQALAAAARAPEVLV
NNAGLQHVAPLEEFPMQRWALLVDVMLTGAARLSRAVLPGMRAGGYGRIVNIGSIHSLVASPYKSAYVAAKHGLIGLSKV
LALETADCDITANTLCPSYVRTPLVERQIADQARTRGIAEDAVIREVMLKPMPKGAFIEYDELAGTVAFLMSHAARNLTG
QAIAIDGGWTAQ
>Mature_252_residues
MRSILITGAGSGIGAGLATVLAADGHHLLVSDADLAAAEQTTQQVRAAGGSAEALVLDVTDEHSIAQALAAAARAPEVLV
NNAGLQHVAPLEEFPMQRWALLVDVMLTGAARLSRAVLPGMRAGGYGRIVNIGSIHSLVASPYKSAYVAAKHGLIGLSKV
LALETADCDITANTLCPSYVRTPLVERQIADQARTRGIAEDAVIREVMLKPMPKGAFIEYDELAGTVAFLMSHAARNLTG
QAIAIDGGWTAQ

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=28.2258064516129, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=28.515625, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI7657478, Length=189, Percent_Identity=35.4497354497354, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI66933014, Length=231, Percent_Identity=29.004329004329, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI223718074, Length=170, Percent_Identity=38.2352941176471, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI4504505, Length=187, Percent_Identity=32.0855614973262, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=29.5275590551181, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=28.7449392712551, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI142976729, Length=192, Percent_Identity=29.6875, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=29.7435897435897, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI210032110, Length=185, Percent_Identity=28.1081081081081, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI20149619, Length=201, Percent_Identity=28.3582089552239, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=26.5873015873016, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI157739938, Length=189, Percent_Identity=22.7513227513227, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI5031737, Length=256, Percent_Identity=27.34375, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI40807363, Length=227, Percent_Identity=26.431718061674, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI126723191, Length=175, Percent_Identity=29.1428571428571, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=23.8095238095238, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI150247226, Length=196, Percent_Identity=30.6122448979592, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI40254986, Length=164, Percent_Identity=28.0487804878049, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=34.7826086956522, Blast_Score=117, Evalue=5e-28,
Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=33.8709677419355, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=30.8, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=32.4, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=28.968253968254, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=26.2948207171315, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=30.2325581395349, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI2367175, Length=253, Percent_Identity=28.8537549407115, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=27.4900398406374, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=28.0155642023346, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786701, Length=189, Percent_Identity=27.5132275132275, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=30.241935483871, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=26.7716535433071, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17568967, Length=183, Percent_Identity=32.2404371584699, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=257, Percent_Identity=27.2373540856031, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=31.0160427807487, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=25.2, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193203117, Length=190, Percent_Identity=27.8947368421053, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=190, Percent_Identity=27.8947368421053, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=191, Percent_Identity=26.7015706806283, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=24.3027888446215, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=25.4980079681275, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=27.0676691729323, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=166, Percent_Identity=28.3132530120482, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=202, Percent_Identity=26.7326732673267, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=202, Percent_Identity=26.7326732673267, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=28.0898876404494, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=253, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=23.3463035019455, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=24.5059288537549, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=187, Percent_Identity=35.2941176470588, Blast_Score=99, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=30.8, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI18859837, Length=260, Percent_Identity=29.2307692307692, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=29.1338582677165, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=31.7460317460317, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24643142, Length=251, Percent_Identity=29.4820717131474, Blast_Score=88, Evalue=7e-18,
Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=26.984126984127, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=29.0196078431373, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21358495, Length=253, Percent_Identity=24.1106719367589, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=25.8964143426295, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24649181, Length=186, Percent_Identity=29.0322580645161, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21357673, Length=188, Percent_Identity=27.1276595744681, Blast_Score=68, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011294
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.30 [H]

Molecular weight: Translated: 26194; Mature: 26194

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSILITGAGSGIGAGLATVLAADGHHLLVSDADLAAAEQTTQQVRAAGGSAEALVLDVT
CCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEC
DEHSIAQALAAAARAPEVLVNNAGLQHVAPLEEFPMQRWALLVDVMLTGAARLSRAVLPG
CCHHHHHHHHHHHCCCHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
MRAGGYGRIVNIGSIHSLVASPYKSAYVAAKHGLIGLSKVLALETADCDITANTLCPSYV
CCCCCCCEEEECCHHHHHHHCCHHHHHHHHHCCHHHHHHHHHEECCCCCEEHHHCCHHHH
RTPLVERQIADQARTRGIAEDAVIREVMLKPMPKGAFIEYDELAGTVAFLMSHAARNLTG
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCC
QAIAIDGGWTAQ
CEEEECCCCCCC
>Mature Secondary Structure
MRSILITGAGSGIGAGLATVLAADGHHLLVSDADLAAAEQTTQQVRAAGGSAEALVLDVT
CCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEC
DEHSIAQALAAAARAPEVLVNNAGLQHVAPLEEFPMQRWALLVDVMLTGAARLSRAVLPG
CCHHHHHHHHHHHCCCHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
MRAGGYGRIVNIGSIHSLVASPYKSAYVAAKHGLIGLSKVLALETADCDITANTLCPSYV
CCCCCCCEEEECCHHHHHHHCCHHHHHHHHHCCHHHHHHHHHEECCCCCEEHHHCCHHHH
RTPLVERQIADQARTRGIAEDAVIREVMLKPMPKGAFIEYDELAGTVAFLMSHAARNLTG
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCC
QAIAIDGGWTAQ
CEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9922248; 11481431 [H]