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The map label for this gene is araQ [H]

Identifier: 66768235

GI number: 66768235

Start: 2312359

End: 2313195

Strand: Direct

Name: araQ [H]

Synonym: XC_1914

Alternate gene names: 66768235

Gene position: 2312359-2313195 (Clockwise)

Preceding gene: 66768234

Following gene: 66768236

Centisome position: 44.91

GC content: 62.25

Gene sequence:

>837_bases
ATGAGTCGTGATGTGGGCGAATCGCGCTGGAATGGCCTGCTGATCAATGGCGGGTTGTTGCTGCTGGCGCTGGTCAGCCT
GGCGCCGCTGTTGTGGATGCTGTCGGTGTCGTTCATGCCCACCGGCGAGGCCAGCCGGTTTCCGCCGCCGATGCTGCCGT
CGGCGTTCACCCTGGCCAACTACCACGAGCTGTTCGCCCGCACCGGCATGGCGCGCAACTTCGCCAACAGCCTGATGGTG
TCGGGGCTGATCACGCTGGGCTCGTTGCTGATCAACACCATGGCCGGCTACGCGTTTGCCAAGCTGCAGTTCATCGGCCG
CGAGCGCATCTTCAAGATCCTGATGGCCGCGCTGGTGATCCCGGCGCAGGTGGCGATGCTGCCGCTGTTCCTGCTGATGA
AGCAGCTGCATCTGGTCAACAACATCGGCGGGGTGGTGGTGCCGGCACTGGCCACCGTGTTCGGTATCTTCTTGGTGCGC
CAGTACGCGCGCAGCATTCCCGATGAGCTGATCGAAGCGGCACGCATCGATGGCGCCAGCGAGATGCGGATCTTCTTCCA
GATCGTGCTGCCGATGCTCAAGCCGGTGCTTGTCACCTTGACCATCTTCACCTTCATGGGCTCGTGGAACGACTTCATGT
GGCCGCTGATCGTGCTGACCGACCAGGAGCAATACACCTTGCCGGTGGCGCTGGCCGCATTGTCGCGCGAGCACATCATG
GACGTGGAATTGATGATGGCCGGCGCGGTGGTGACGGTGATTCCGGTGCTGCTATTGTTCCTGGCGCTGCAGCGTTACTA
CATCCAAGGTCTTCTGCTGGGGAGTGTGAAGGGGTGA

Upstream 100 bases:

>100_bases
GGAACCTCGGCCGCGCGTCGGCGGTGGCGTTCCTGCTGTTCCTGATCATCCTGACCGTGACCACCGTGATGCTGCGCTTC
GGGCGCAAGAAGGACCTGAT

Downstream 100 bases:

>100_bases
AGCCAATTTTCCTGCGACTGTTTGCCATGGCCGCTGTTGCCACCGCGGGTGCGGCACAGGCGCAGGAGCGCGTGCTCGAC
GGATTCAACGACATCGCCGC

Product: ABC transporter sugar permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSRDVGESRWNGLLINGGLLLLALVSLAPLLWMLSVSFMPTGEASRFPPPMLPSAFTLANYHELFARTGMARNFANSLMV
SGLITLGSLLINTMAGYAFAKLQFIGRERIFKILMAALVIPAQVAMLPLFLLMKQLHLVNNIGGVVVPALATVFGIFLVR
QYARSIPDELIEAARIDGASEMRIFFQIVLPMLKPVLVTLTIFTFMGSWNDFMWPLIVLTDQEQYTLPVALAALSREHIM
DVELMMAGAVVTVIPVLLLFLALQRYYIQGLLLGSVKG

Sequences:

>Translated_278_residues
MSRDVGESRWNGLLINGGLLLLALVSLAPLLWMLSVSFMPTGEASRFPPPMLPSAFTLANYHELFARTGMARNFANSLMV
SGLITLGSLLINTMAGYAFAKLQFIGRERIFKILMAALVIPAQVAMLPLFLLMKQLHLVNNIGGVVVPALATVFGIFLVR
QYARSIPDELIEAARIDGASEMRIFFQIVLPMLKPVLVTLTIFTFMGSWNDFMWPLIVLTDQEQYTLPVALAALSREHIM
DVELMMAGAVVTVIPVLLLFLALQRYYIQGLLLGSVKG
>Mature_277_residues
SRDVGESRWNGLLINGGLLLLALVSLAPLLWMLSVSFMPTGEASRFPPPMLPSAFTLANYHELFARTGMARNFANSLMVS
GLITLGSLLINTMAGYAFAKLQFIGRERIFKILMAALVIPAQVAMLPLFLLMKQLHLVNNIGGVVVPALATVFGIFLVRQ
YARSIPDELIEAARIDGASEMRIFFQIVLPMLKPVLVTLTIFTFMGSWNDFMWPLIVLTDQEQYTLPVALAALSREHIMD
VELMMAGAVVTVIPVLLLFLALQRYYIQGLLLGSVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=234, Percent_Identity=30.7692307692308, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1787571, Length=265, Percent_Identity=29.811320754717, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790464, Length=254, Percent_Identity=26.3779527559055, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30674; Mature: 30542

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRDVGESRWNGLLINGGLLLLALVSLAPLLWMLSVSFMPTGEASRFPPPMLPSAFTLAN
CCCCCCCHHHCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
YHELFARTGMARNFANSLMVSGLITLGSLLINTMAGYAFAKLQFIGRERIFKILMAALVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PAQVAMLPLFLLMKQLHLVNNIGGVVVPALATVFGIFLVRQYARSIPDELIEAARIDGAS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHH
EMRIFFQIVLPMLKPVLVTLTIFTFMGSWNDFMWPLIVLTDQEQYTLPVALAALSREHIM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
DVELMMAGAVVTVIPVLLLFLALQRYYIQGLLLGSVKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SRDVGESRWNGLLINGGLLLLALVSLAPLLWMLSVSFMPTGEASRFPPPMLPSAFTLAN
CCCCCCHHHCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
YHELFARTGMARNFANSLMVSGLITLGSLLINTMAGYAFAKLQFIGRERIFKILMAALVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PAQVAMLPLFLLMKQLHLVNNIGGVVVPALATVFGIFLVRQYARSIPDELIEAARIDGAS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHH
EMRIFFQIVLPMLKPVLVTLTIFTFMGSWNDFMWPLIVLTDQEQYTLPVALAALSREHIM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
DVELMMAGAVVTVIPVLLLFLALQRYYIQGLLLGSVKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]