| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
Click here to switch to the map view.
The map label for this gene is eutC
Identifier: 66768175
GI number: 66768175
Start: 2249270
End: 2250088
Strand: Reverse
Name: eutC
Synonym: XC_1854
Alternate gene names: 66768175
Gene position: 2250088-2249270 (Counterclockwise)
Preceding gene: 66768176
Following gene: 66768171
Centisome position: 43.7
GC content: 67.03
Gene sequence:
>819_bases ATGAGCACGCCAACCACACCACCTCGCGATGCGTGGGCACGCTTGCGAGCGCTGACACCGGCTCGCATCGCGTTGGGGCG AGCCGGTACCAGCCTGCCGACCGCTTCGCATCTGGAGTTCCAGCTTGCGCATGCGCAGGCGCGCGATGCCGTGCACCTGG CGTTCGATCCTGCGCCGTTGCAGGCGGTGCTGCAGCAGCGCGGCCGCCGCAGCGTGTTGCTGCATAGCGCGGCATCCGAC CGTCATCTGTATCTGCAACGGCCCGACCTGGGCCGCCGCCTGAGCGATGAGGCGGCCGAACAGCTGCGTGGCACGACCGC CGTGCATGGCGGTGGCGCGGATCTGGCGGTGGTGGTGGCAGACGGCCTGTCTGCACTGGCGGTGCATCGGCATGCAGGCG CGATGCTGGAGCACATCGATGCGCTGGCTGCGCACGAAGGATGGTCGTTGGCGCCGGTGACCCTGATTGCGCAAGGCCGC GTGGCGATTGGCGATGAGGTGGGCGAACTGCTGCAGGCGCAAGCGGTGATCGTGCTGATTGGCGAGCGCCCGGGGCTCAG CTCGCCGGACAGCCTGGGGCTGTATCTCACCTATGCGCCGCGTGTTGGCCATACCGATGCGGCACGCAACTGCATTTCCA ATATCCGTGGCGAAGGCCTGAGCTATGCCGAGGCTGGCCACAAGCTCGGGTACCTGCTGCGCGAGGCGTTCAGACGCAAA CTCTCTGGCGTGCAGCTCAAGGACGAAGCGGATCGCCCATTGCTGGGCACCGATACCGCATCGCAAGCGGCGCCGCGCAA CTTCCTGCTGCCTGAATAA
Upstream 100 bases:
>100_bases AAGGCATCCTGCGCCTGCGCGATGGCCGGTTCGAATTGGGCAGTGAGATGCCGGCGCCGTTTCGCAAGGCGCTGTCACAG CTGGATGCGGAGCAACGCGG
Downstream 100 bases:
>100_bases ACGAAGAGCGCATGGCGCTGCCTGGAGTGGCGGCGCCATGCGCTCGTTTGCGGACCACAACGTTGACGCGCGCGCTTACT TGAGCGCGCCATCCTGCGGA
Product: ethanolamine ammonia-lyase small subunit
Products: NA
Alternate protein names: Ethanolamine ammonia-lyase small subunit
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MSTPTTPPRDAWARLRALTPARIALGRAGTSLPTASHLEFQLAHAQARDAVHLAFDPAPLQAVLQQRGRRSVLLHSAASD RHLYLQRPDLGRRLSDEAAEQLRGTTAVHGGGADLAVVVADGLSALAVHRHAGAMLEHIDALAAHEGWSLAPVTLIAQGR VAIGDEVGELLQAQAVIVLIGERPGLSSPDSLGLYLTYAPRVGHTDAARNCISNIRGEGLSYAEAGHKLGYLLREAFRRK LSGVQLKDEADRPLLGTDTASQAAPRNFLLPE
Sequences:
>Translated_272_residues MSTPTTPPRDAWARLRALTPARIALGRAGTSLPTASHLEFQLAHAQARDAVHLAFDPAPLQAVLQQRGRRSVLLHSAASD RHLYLQRPDLGRRLSDEAAEQLRGTTAVHGGGADLAVVVADGLSALAVHRHAGAMLEHIDALAAHEGWSLAPVTLIAQGR VAIGDEVGELLQAQAVIVLIGERPGLSSPDSLGLYLTYAPRVGHTDAARNCISNIRGEGLSYAEAGHKLGYLLREAFRRK LSGVQLKDEADRPLLGTDTASQAAPRNFLLPE >Mature_271_residues STPTTPPRDAWARLRALTPARIALGRAGTSLPTASHLEFQLAHAQARDAVHLAFDPAPLQAVLQQRGRRSVLLHSAASDR HLYLQRPDLGRRLSDEAAEQLRGTTAVHGGGADLAVVVADGLSALAVHRHAGAMLEHIDALAAHEGWSLAPVTLIAQGRV AIGDEVGELLQAQAVIVLIGERPGLSSPDSLGLYLTYAPRVGHTDAARNCISNIRGEGLSYAEAGHKLGYLLREAFRRKL SGVQLKDEADRPLLGTDTASQAAPRNFLLPE
Specific function: Ethanolamine utilization. [C]
COG id: COG4302
COG function: function code E; Ethanolamine ammonia-lyase, small subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the eutC family
Homologues:
Organism=Escherichia coli, GI1788781, Length=240, Percent_Identity=36.25, Blast_Score=132, Evalue=3e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): EUTC_XANC8 (Q4UVK6)
Other databases:
- EMBL: CP000050 - RefSeq: YP_242937.1 - STRING: Q4UVK6 - GeneID: 3380401 - GenomeReviews: CP000050_GR - KEGG: xcb:XC_1854 - eggNOG: COG4302 - HOGENOM: HBG363176 - OMA: RNCVSNI - PhylomeDB: Q4UVK6 - ProtClustDB: PRK05465 - BioCyc: XCAM314565:XC_1854-MONOMER - HAMAP: MF_00601 - InterPro: IPR009246 - PIRSF: PIRSF018982
Pfam domain/function: PF05985 EutC
EC number: =4.3.1.7
Molecular weight: Translated: 28960; Mature: 28829
Theoretical pI: Translated: 7.93; Mature: 7.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPTTPPRDAWARLRALTPARIALGRAGTSLPTASHLEFQLAHAQARDAVHLAFDPAPL CCCCCCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHEEEEHHHHCCCEEEEEECCHHH QAVLQQRGRRSVLLHSAASDRHLYLQRPDLGRRLSDEAAEQLRGTTAVHGGGADLAVVVA HHHHHHCCCCEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCEEEEEE DGLSALAVHRHAGAMLEHIDALAAHEGWSLAPVTLIAQGRVAIGDEVGELLQAQAVIVLI CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEHHHHHHHHHHCEEEEEE GERPGLSSPDSLGLYLTYAPRVGHTDAARNCISNIRGEGLSYAEAGHKLGYLLREAFRRK ECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH LSGVQLKDEADRPLLGTDTASQAAPRNFLLPE HCCCEECCCCCCCEECCCCCHHHCCCCCCCCC >Mature Secondary Structure STPTTPPRDAWARLRALTPARIALGRAGTSLPTASHLEFQLAHAQARDAVHLAFDPAPL CCCCCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHEEEEHHHHCCCEEEEEECCHHH QAVLQQRGRRSVLLHSAASDRHLYLQRPDLGRRLSDEAAEQLRGTTAVHGGGADLAVVVA HHHHHHCCCCEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCEEEEEE DGLSALAVHRHAGAMLEHIDALAAHEGWSLAPVTLIAQGRVAIGDEVGELLQAQAVIVLI CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEHHHHHHHHHHCEEEEEE GERPGLSSPDSLGLYLTYAPRVGHTDAARNCISNIRGEGLSYAEAGHKLGYLLREAFRRK ECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH LSGVQLKDEADRPLLGTDTASQAAPRNFLLPE HCCCEECCCCCCCEECCCCCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA