Click here to switch to the map view.

The map label for this gene is ydiU [C]

Identifier: 66768152

GI number: 66768152

Start: 2223767

End: 2225323

Strand: Direct

Name: ydiU [C]

Synonym: XC_1831

Alternate gene names: 66768152

Gene position: 2223767-2225323 (Clockwise)

Preceding gene: 66768150

Following gene: 66768153

Centisome position: 43.19

GC content: 67.69

Gene sequence:

>1557_bases
ATGACCCATCTTCAATTCGATAACCGTTTGCGCGCCGAGTTGCCGGGCGACCCGGAAGAAGGCCCACGCCGCCGCGAAGT
GCTGGCCGCCTGGTCTGCGGTGCAGCCGACGCCGGTCGCTGCGCCCACACTGCTGGCGTATTCGGCCGATGTCGCGCAGC
GCCTGGGCCTGCGTGCCGAGGATCTTGCCAGCCCACGGTTTGCCGAGGTGTTTGGCGGCAATGCCTTGTATCCCGGAATG
CAGCCGTGGGCGGTCAACTACGGTGGTCACCAGTTTGGGCATTGGGCAGGACAGCTGGGCGATGGCCGCGCGATCTCATT
GGGCGAGGCCATCGGGGTCGATGGCGGGCGCTACGAGCTCCAGCTCAAGGGCGCCGGGCCAACGCCGTATTCGCGTGGGG
CGGATGGCCGCGCCGTGCTGCGTTCGTCGATCCGCGAATTCCTGTGCAGCGAGGCGATGCATTACCTGGGCGTGCCGACC
ACCCGGGCGTTGAGCCTGGTGGGCACCGGTGATGCAGTGGTGCGCGACATGTTCTACGACGGGCATCCGCGCCGCGAGCC
GGGCGCGATCGTGTGCCGCGTGGCGCCCTCGTTCATTCGGTTCGGCAATTTCGAACTGCCCGCCGCGCGTGGCGACGTCG
ATCTGCTACGGCAGTGGGTGGACTTCACCCTGGCGCGCGATTTCCCTGACCTGCCGGGCAGCGGCGAAGACCGGATTGCC
TCCTGGCTCGGCCAGGTGTGCGAGCGCACTGCGGTGATGGTCGCGCACTGGATGCGCGTGGGCTTCGTGCATGGGGTGAT
GAATACCGACAACATGTCCATCCTGGGGCTCACCATCGACTACGGCCCCTACGGCTGGGTGGACGATTACGACCCGGATT
GGACGCCCAACACCACCGATGCGCAGGGTCGCCGTTATCGCTTCGGCACCCAGCCGCAGGTGGCGTACTGGAACCTGGGG
CGGCTGGCCCAGGCACTGTCGCCGCTGTTCGGCGATGCGGCGCCCTTGCAGGCCGGGCTGGACCAGTTTCGTGACACCTA
TCTGGCCTGTGACCGGCGCGATACCGCGGCCAAGCTGGGGCTGGCCGAGTGCCAGGACGAGGATCTGCACCTGATCGACG
ACCTGCGTGCGCTGATGCGCGAAGCGGAGATGGACATGACGCTGACCTTCCGTGGCCTGGTGGATCTGTCGCCGCAGCAG
CCGGATGCTTCTGTGCTGCGTGAGGCCTTCTACGACGAGACCAAGCGTGCTGCGCAGGCGCCAGCGCTGGGCGCCTGGCT
GCAGCGGTATGCCGCACGTTGCCTGCAGGACGGCGCGTCAGATGCGGTTCGCGCTTCGCGGATGCGGGCGGCCAACCCGC
GCTACGTGCTGCGCAATTATCTGGCGCAGCAGGCGATCGACCAGGCCGAGCAGGGCGATCTGTCGGGCGTGCACGCGCTG
CTGGAGGTCATGCAGCGCCCGTACGACGACCAGCCCAGGCGCGAGTCATTCGCAGCTAAGCGCCCGGACTGGGCGCGGGA
CCGCGCGGGATGCTCGATGTTGTCCTGCAGTTCCTGA

Upstream 100 bases:

>100_bases
CTTGGCAATGGTGCAGCAGGTGAAGATACGATGCCGGCGCGCGCGTGGATGCGTGCTGCGCGCATGCGAAGTTCATCGCC
AGTGCCCTAGGCTTGCACGC

Downstream 100 bases:

>100_bases
CGCGCTCATGTCGGCAGCGGTCGTCGGCGCCGCACAGTCGGCCCGCTCGCCTAGAATAGAGCGCTCCCACTGGCCACGAC
CGCCATGAACGACTGCAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 517

Protein sequence:

>518_residues
MTHLQFDNRLRAELPGDPEEGPRRREVLAAWSAVQPTPVAAPTLLAYSADVAQRLGLRAEDLASPRFAEVFGGNALYPGM
QPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPT
TRALSLVGTGDAVVRDMFYDGHPRREPGAIVCRVAPSFIRFGNFELPAARGDVDLLRQWVDFTLARDFPDLPGSGEDRIA
SWLGQVCERTAVMVAHWMRVGFVHGVMNTDNMSILGLTIDYGPYGWVDDYDPDWTPNTTDAQGRRYRFGTQPQVAYWNLG
RLAQALSPLFGDAAPLQAGLDQFRDTYLACDRRDTAAKLGLAECQDEDLHLIDDLRALMREAEMDMTLTFRGLVDLSPQQ
PDASVLREAFYDETKRAAQAPALGAWLQRYAARCLQDGASDAVRASRMRAANPRYVLRNYLAQQAIDQAEQGDLSGVHAL
LEVMQRPYDDQPRRESFAAKRPDWARDRAGCSMLSCSS

Sequences:

>Translated_518_residues
MTHLQFDNRLRAELPGDPEEGPRRREVLAAWSAVQPTPVAAPTLLAYSADVAQRLGLRAEDLASPRFAEVFGGNALYPGM
QPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPT
TRALSLVGTGDAVVRDMFYDGHPRREPGAIVCRVAPSFIRFGNFELPAARGDVDLLRQWVDFTLARDFPDLPGSGEDRIA
SWLGQVCERTAVMVAHWMRVGFVHGVMNTDNMSILGLTIDYGPYGWVDDYDPDWTPNTTDAQGRRYRFGTQPQVAYWNLG
RLAQALSPLFGDAAPLQAGLDQFRDTYLACDRRDTAAKLGLAECQDEDLHLIDDLRALMREAEMDMTLTFRGLVDLSPQQ
PDASVLREAFYDETKRAAQAPALGAWLQRYAARCLQDGASDAVRASRMRAANPRYVLRNYLAQQAIDQAEQGDLSGVHAL
LEVMQRPYDDQPRRESFAAKRPDWARDRAGCSMLSCSS
>Mature_517_residues
THLQFDNRLRAELPGDPEEGPRRREVLAAWSAVQPTPVAAPTLLAYSADVAQRLGLRAEDLASPRFAEVFGGNALYPGMQ
PWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPTT
RALSLVGTGDAVVRDMFYDGHPRREPGAIVCRVAPSFIRFGNFELPAARGDVDLLRQWVDFTLARDFPDLPGSGEDRIAS
WLGQVCERTAVMVAHWMRVGFVHGVMNTDNMSILGLTIDYGPYGWVDDYDPDWTPNTTDAQGRRYRFGTQPQVAYWNLGR
LAQALSPLFGDAAPLQAGLDQFRDTYLACDRRDTAAKLGLAECQDEDLHLIDDLRALMREAEMDMTLTFRGLVDLSPQQP
DASVLREAFYDETKRAAQAPALGAWLQRYAARCLQDGASDAVRASRMRAANPRYVLRNYLAQQAIDQAEQGDLSGVHALL
EVMQRPYDDQPRRESFAAKRPDWARDRAGCSMLSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=385, Percent_Identity=47.7922077922078, Blast_Score=313, Evalue=3e-85,
Organism=Escherichia coli, GI1787999, Length=515, Percent_Identity=44.4660194174757, Blast_Score=388, Evalue=1e-109,
Organism=Saccharomyces cerevisiae, GI6325034, Length=312, Percent_Identity=38.7820512820513, Blast_Score=209, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1831_XANC8 (Q4UVM9)

Other databases:

- EMBL:   CP000050
- RefSeq:   YP_242914.1
- STRING:   Q4UVM9
- GeneID:   3380378
- GenomeReviews:   CP000050_GR
- KEGG:   xcb:XC_1831
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   FGSYNPR
- PhylomeDB:   Q4UVM9
- ProtClustDB:   PRK00029
- BioCyc:   XCAM314565:XC_1831-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 57260; Mature: 57129

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHLQFDNRLRAELPGDPEEGPRRREVLAAWSAVQPTPVAAPTLLAYSADVAQRLGLRAE
CCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHH
DLASPRFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYEL
HHCCCHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCCEEECCHHHCCCCCEEEE
QLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPTTRALSLVGTGDAVVRDMFYD
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEECCCHHHHHHHHHC
GHPRREPGAIVCRVAPSFIRFGNFELPAARGDVDLLRQWVDFTLARDFPDLPGSGEDRIA
CCCCCCCCCEEEEECHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH
SWLGQVCERTAVMVAHWMRVGFVHGVMNTDNMSILGLTIDYGPYGWVDDYDPDWTPNTTD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCC
AQGRRYRFGTQPQVAYWNLGRLAQALSPLFGDAAPLQAGLDQFRDTYLACDRRDTAAKLG
CCCCEEECCCCCCEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHCC
LAECQDEDLHLIDDLRALMREAEMDMTLTFRGLVDLSPQQPDASVLREAFYDETKRAAQA
HHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
PALGAWLQRYAARCLQDGASDAVRASRMRAANPRYVLRNYLAQQAIDQAEQGDLSGVHAL
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LEVMQRPYDDQPRRESFAAKRPDWARDRAGCSMLSCSS
HHHHHCCCCCCCHHHHHCCCCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure 
THLQFDNRLRAELPGDPEEGPRRREVLAAWSAVQPTPVAAPTLLAYSADVAQRLGLRAE
CCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHH
DLASPRFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYEL
HHCCCHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCCEEECCHHHCCCCCEEEE
QLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPTTRALSLVGTGDAVVRDMFYD
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEECCCHHHHHHHHHC
GHPRREPGAIVCRVAPSFIRFGNFELPAARGDVDLLRQWVDFTLARDFPDLPGSGEDRIA
CCCCCCCCCEEEEECHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH
SWLGQVCERTAVMVAHWMRVGFVHGVMNTDNMSILGLTIDYGPYGWVDDYDPDWTPNTTD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCC
AQGRRYRFGTQPQVAYWNLGRLAQALSPLFGDAAPLQAGLDQFRDTYLACDRRDTAAKLG
CCCCEEECCCCCCEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHCC
LAECQDEDLHLIDDLRALMREAEMDMTLTFRGLVDLSPQQPDASVLREAFYDETKRAAQA
HHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
PALGAWLQRYAARCLQDGASDAVRASRMRAANPRYVLRNYLAQQAIDQAEQGDLSGVHAL
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LEVMQRPYDDQPRRESFAAKRPDWARDRAGCSMLSCSS
HHHHHCCCCCCCHHHHHCCCCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA