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The map label for this gene is ybeY [C]

Identifier: 66768106

GI number: 66768106

Start: 2171175

End: 2171660

Strand: Reverse

Name: ybeY [C]

Synonym: XC_1785

Alternate gene names: 66768106

Gene position: 2171660-2171175 (Counterclockwise)

Preceding gene: 77761167

Following gene: 66768105

Centisome position: 42.18

GC content: 66.46

Gene sequence:

>486_bases
ATGACCAAAGGTCCGGTCCGCCTCGACGTCGGAGTCAGCTATGCGCTGCCGCGCACCGGGCTACCGTCGTCGGTGAGTTT
TCGCAAGTGGGTGGCGGCCGCGCTGAAGGGGCGGATCCGCGAAGCCGATCTGGCGGTACGCGTGGTCGACGAGAAGGAAG
GCTGCTCGCTCAACCATCACTACCGCGGCAAGGATTACGCCACCAACGTGCTCAGCTTCCCGGCGGAGATGCCTCAGGGC
CTGCCCAAGGGCGTCAAGATGCCGCTGCTTGGCGATCTGGTGATCTGTGCGCCGGTGGTGGCCCGCGAGGCCGCCGAGCA
AGGCAAGTCACTGAGCGCGCACTACGCGCACCTCACCGTGCACGGCACCTTGCACCTGCTGGGCTGGGACCACGAGGACG
ACAAGGAAGCCGACGCGATGGAACAGCTGGAGCGCGAGATCCTGGCCGAACTCGGCATTGACGACCCGTACGCGGGAGAG
CGCTGA

Upstream 100 bases:

>100_bases
GTGGTCGAAATCGCGTATGACGCAGGCGACTGGAAGTCGCAGTAAAACAGCACACGCGCGATACTGTTGCTCCTGTCTGA
TCAGAATGATTGGTGTCCCC

Downstream 100 bases:

>100_bases
TGCGGCGGTGGGTGATGATTGGCCTGCTGGTGGCAGCTGCCTGCCCGGCCTGGGCGCAGACCGCGCCGGTGCGCCCGGAT
TTGCCGGCCCTGATCGAGTG

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MTKGPVRLDVGVSYALPRTGLPSSVSFRKWVAAALKGRIREADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAEMPQG
LPKGVKMPLLGDLVICAPVVAREAAEQGKSLSAHYAHLTVHGTLHLLGWDHEDDKEADAMEQLEREILAELGIDDPYAGE
R

Sequences:

>Translated_161_residues
MTKGPVRLDVGVSYALPRTGLPSSVSFRKWVAAALKGRIREADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAEMPQG
LPKGVKMPLLGDLVICAPVVAREAAEQGKSLSAHYAHLTVHGTLHLLGWDHEDDKEADAMEQLEREILAELGIDDPYAGE
R
>Mature_160_residues
TKGPVRLDVGVSYALPRTGLPSSVSFRKWVAAALKGRIREADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAEMPQGL
PKGVKMPLLGDLVICAPVVAREAAEQGKSLSAHYAHLTVHGTLHLLGWDHEDDKEADAMEQLEREILAELGIDDPYAGER

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=144, Percent_Identity=53.4722222222222, Blast_Score=143, Evalue=6e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 17609; Mature: 17478

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKGPVRLDVGVSYALPRTGLPSSVSFRKWVAAALKGRIREADLAVRVVDEKEGCSLNHH
CCCCCEEEECCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC
YRGKDYATNVLSFPAEMPQGLPKGVKMPLLGDLVICAPVVAREAAEQGKSLSAHYAHLTV
CCCCHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
HGTLHLLGWDHEDDKEADAMEQLEREILAELGIDDPYAGER
EEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TKGPVRLDVGVSYALPRTGLPSSVSFRKWVAAALKGRIREADLAVRVVDEKEGCSLNHH
CCCCEEEECCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC
YRGKDYATNVLSFPAEMPQGLPKGVKMPLLGDLVICAPVVAREAAEQGKSLSAHYAHLTV
CCCCHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
HGTLHLLGWDHEDDKEADAMEQLEREILAELGIDDPYAGER
EEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]