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The map label for this gene is secD [H]

Identifier: 66768061

GI number: 66768061

Start: 2101051

End: 2102919

Strand: Direct

Name: secD [H]

Synonym: XC_1738

Alternate gene names: 66768061

Gene position: 2101051-2102919 (Clockwise)

Preceding gene: 66768060

Following gene: 66768062

Centisome position: 40.81

GC content: 64.53

Gene sequence:

>1869_bases
ATGGTGCCGCGCGGGACTGTCGCAATGCTCGAATTTCCTCGCTGGAAGTATTTCCTGATCCTGGTGGTGCTGGCGGTCAG
CGCGTTGTATGCGCTGCCCAACGTCTACCAGAAAGACCCGTCCGTGCAGATCACCGCCAGCCGCGGTGCGCAGCTGGACG
ACGCGTTGCGCAGCCGGATCGACGCCGACCTCAAGAGCGCCGGCATCACGCCCAAGGCGGTGACCCGGGAAGGCGACAGC
CTGATGGTGCGCCTGCCCACCCTGCAGGCGCAGACCCGTGCCAACGACGTGTTGCGCCAGCAGCTGGGCGAGAACTACAC
GGTGGCGCTGAACCTGGCATCCACGGTGCCGGACTGGCTCGCCAAGCTGGGCGGCCGGCCGATGGTGCTGGGTCTGGACC
TGGTCGGCGGCGTGCACTTCGCCATGCAGGTCGATCAGAAAGCCGCGCTGGAAAAGCGCCTGGAGGGCTTTGCCGAGGAC
ATCCGCACCACGCTGCGCGATGGCCGCATTGCGTATCGCTCGGTGGAGCGTCGTGGCGACAACAGCATCCAGGTCTCGTT
GGGCGAGGGCGCCAGCGCCGATGCCGCGCGGACCGCGCTGGCCAAGTCGCAGCCAACGCTGACCTACGACGTCAGCGGCC
AGACCATCTCGGTGAAGGTGCCGGAGGCCGAACTCAAGCAGATCGCCAGCGGTGCGATCGAGCAGAACCTCACCACCTTG
CGCAATCGTGTCAACGCGCTGGGCGTGTCCGAGCCGACCATCCAGCGCCAGGGCGAAGACCGCATCGTGGTCGAATTGCC
GGGCCTGCAGGACACCGCCGAGGCCAAGCGCCTGATCGGTGCCACGGCCTCGCTGGAATTCCGTGCGGTGGTCGAAGGCA
ATGCCGAAGATGCCGTGCGCAGCGGCACCATTCCGCCGGAAGCCAAGGTCTACCGTCTGCGCGACAGCAATGCACCGGTG
TTGCTCAACAAGCGCGCGCTGGTGACTGGTGATCAGATGGTCAGTGCCAGCGTCAGCAACGACCAGAACGGCATGCCGGC
GGTGGCGGTGACGCTCAACAACGTCGCCGGCCAGCGCATGCTCGACTACACCAGCGCCAATGTCGGCAAGCTCATGTCGG
TGGTCTACATCGAGCGCATTCCCACCGTGACCATGGTTGACGGCAAGGAAGTGCGCAGCGTGCGGGTCAAGGAAGAGGCT
CTGTCGCCGACCCGCATCGCCGGCGTGTTCGGCAAGAATTTCCAGACCACCGGTCTGGAAAAGACCGAAGCCGAGAACCT
GGCCAAGTTGTTGAAGTCCGGCTCGCTGGCCGCGCCGATGGATTTCGTCGAGGAATACGTGATTGGCCCGAGCCTGGGTG
CGGAGAACGTGGAGCGCGGCGTCACTGCGGTGGTGTTCTCGTTCGTGTTCACCCTGGTGTTCTTCACCGTCTACTACCGC
ATGTTCGGCGCGATCACCTCGGTGGCGCTGCTGTTCAACCTGCTGATCGTGATCGCGGTGATGTCGCTATTCGGCGCCAC
CATGACGCTGCCGGGCTTTGCCGGTCTGGCGTTGTCGGTGGGTCTGTCGGTGGACGCCAACGTGCTGATCAACGAGCGTA
TCCGCGAAGAATTACGTCTCGGCGTGCCGCCCAAGTCGGCGATCGTGGCCGGTTACGAGAAGGCCGGTGGCACCATCCTC
GACGCTAACCTGACCGGGTTGATCGTCGGCGTGGCGCTGTACGCGTTCGGTACCGGCCCGCTGAAGGGCTTCGCGCTGAC
CATGATCATCGGTATTTTCGCCTCGATGTTCACCGCGATCACCGTGTCGCGCGCGCTGGCGGTGCTGATCTATGGCAGCC
GCAAGAAGCTGAAGTCTGTCGCTATTTAA

Upstream 100 bases:

>100_bases
GGCGCTTTTGCTCCATGCACTGCCCGTATCCACCGGATGACCGCTCGCGACGCTGTATCGGCCGCCTGAAGTCGTTCTCA
CTGCTAGGCGCGGCGCCGGG

Downstream 100 bases:

>100_bases
TGCGAGTCCCTCGCAAGAGCCCGCAGGTAAAATGCGAGTCCCTCGCAAGAGCCCGCACATCCATGTGCGGACTTTTTAGG
AAGATCTTTCAATGAAAATT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 622; Mature: 622

Protein sequence:

>622_residues
MVPRGTVAMLEFPRWKYFLILVVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDADLKSAGITPKAVTREGDS
LMVRLPTLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAED
IRTTLRDGRIAYRSVERRGDNSIQVSLGEGASADAARTALAKSQPTLTYDVSGQTISVKVPEAELKQIASGAIEQNLTTL
RNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVEGNAEDAVRSGTIPPEAKVYRLRDSNAPV
LLNKRALVTGDQMVSASVSNDQNGMPAVAVTLNNVAGQRMLDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEA
LSPTRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFVFTLVFFTVYYR
MFGAITSVALLFNLLIVIAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPPKSAIVAGYEKAGGTIL
DANLTGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRALAVLIYGSRKKLKSVAI

Sequences:

>Translated_622_residues
MVPRGTVAMLEFPRWKYFLILVVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDADLKSAGITPKAVTREGDS
LMVRLPTLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAED
IRTTLRDGRIAYRSVERRGDNSIQVSLGEGASADAARTALAKSQPTLTYDVSGQTISVKVPEAELKQIASGAIEQNLTTL
RNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVEGNAEDAVRSGTIPPEAKVYRLRDSNAPV
LLNKRALVTGDQMVSASVSNDQNGMPAVAVTLNNVAGQRMLDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEA
LSPTRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFVFTLVFFTVYYR
MFGAITSVALLFNLLIVIAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPPKSAIVAGYEKAGGTIL
DANLTGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRALAVLIYGSRKKLKSVAI
>Mature_622_residues
MVPRGTVAMLEFPRWKYFLILVVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDADLKSAGITPKAVTREGDS
LMVRLPTLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAED
IRTTLRDGRIAYRSVERRGDNSIQVSLGEGASADAARTALAKSQPTLTYDVSGQTISVKVPEAELKQIASGAIEQNLTTL
RNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVEGNAEDAVRSGTIPPEAKVYRLRDSNAPV
LLNKRALVTGDQMVSASVSNDQNGMPAVAVTLNNVAGQRMLDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEA
LSPTRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFVFTLVFFTVYYR
MFGAITSVALLFNLLIVIAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPPKSAIVAGYEKAGGTIL
DANLTGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRALAVLIYGSRKKLKSVAI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=618, Percent_Identity=41.1003236245955, Blast_Score=469, Evalue=1e-133,
Organism=Escherichia coli, GI1786610, Length=175, Percent_Identity=29.7142857142857, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66640; Mature: 66640

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPRGTVAMLEFPRWKYFLILVVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRI
CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEECCCCCHHHHHHHHH
DADLKSAGITPKAVTREGDSLMVRLPTLQAQTRANDVLRQQLGENYTVALNLASTVPDWL
CCHHHHCCCCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHH
AKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAEDIRTTLRDGRIAYRSVERRGD
HHHCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
NSIQVSLGEGASADAARTALAKSQPTLTYDVSGQTISVKVPEAELKQIASGAIEQNLTTL
CEEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHH
RNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVEGNAEDAVR
HHHHHHCCCCCCHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCHHHHHH
SGTIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVSASVSNDQNGMPAVAVTLNNVAGQRM
CCCCCCCCEEEEEECCCCCEEEECCEEECCCHHEEEECCCCCCCCCEEEEEECHHCCHHH
LDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTTGLE
HHHCCCCHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCC
KTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFVFTLVFFTVYYR
HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFGAITSVALLFNLLIVIAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHC
GVPPKSAIVAGYEKAGGTILDANLTGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAI
CCCCHHHHEECHHHCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
TVSRALAVLIYGSRKKLKSVAI
HHHHHHHEEEECCHHHHHHCCC
>Mature Secondary Structure
MVPRGTVAMLEFPRWKYFLILVVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRI
CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEECCCCCHHHHHHHHH
DADLKSAGITPKAVTREGDSLMVRLPTLQAQTRANDVLRQQLGENYTVALNLASTVPDWL
CCHHHHCCCCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHH
AKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAEDIRTTLRDGRIAYRSVERRGD
HHHCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
NSIQVSLGEGASADAARTALAKSQPTLTYDVSGQTISVKVPEAELKQIASGAIEQNLTTL
CEEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHH
RNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVEGNAEDAVR
HHHHHHCCCCCCHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCHHHHHH
SGTIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVSASVSNDQNGMPAVAVTLNNVAGQRM
CCCCCCCCEEEEEECCCCCEEEECCEEECCCHHEEEECCCCCCCCCEEEEEECHHCCHHH
LDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTTGLE
HHHCCCCHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCC
KTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFVFTLVFFTVYYR
HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFGAITSVALLFNLLIVIAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHC
GVPPKSAIVAGYEKAGGTILDANLTGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAI
CCCCHHHHEECHHHCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
TVSRALAVLIYGSRKKLKSVAI
HHHHHHHEEEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]