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The map label for this gene is rhaS [H]

Identifier: 66768020

GI number: 66768020

Start: 2036415

End: 2037131

Strand: Reverse

Name: rhaS [H]

Synonym: XC_1696

Alternate gene names: 66768020

Gene position: 2037131-2036415 (Counterclockwise)

Preceding gene: 77761164

Following gene: 66768019

Centisome position: 39.57

GC content: 64.71

Gene sequence:

>717_bases
ATGACTCCGATGGACCTCAACCTGCCCGCGCTGGAAATGCAGACGTTGTTCGACGCGCTGCCGGATGTGGTGTTCTTCAT
CAAGGATGGCGAAGGCCGCTACACCCATTGCAACCTCACCCTGGTGCGCCGGCTCGGGCGCAAGCTGCGCAGCGAGATCA
TCGGCCGCTCGCCGCTGGAGGTATTCCCGCTGCCGCTGGGTGGCAGCTACATGATGCAGGACCGCCGCGTGCTGTGTGGC
GAGCTCATCGACAACCAGCTGGAAGTGCACCTGTATCCCAATCGCCTGCCGGGTTGGTGCCTCACCTTCAAGCGCCCGCT
GTGCGAAGGCGACGAGGTGATTGGAGTGGTCGGCATTTCGCGCGATCTTGGCCAGCCGGACAGCCGTCACTCGGCGTACG
AGCGCCTGAGCCAGGTGATGGACCACATGCAGGCCAACTTCGGCGACAACCTGCGCGTGCAGGCGCTGGCCGACCTGGCC
GGGTTGTCGGTGGCGCAGCTGGAACGGCATTTCCGCCGCGTGTTCCAGGTGACGCCGCAGCAACTGCTGACCAAGTTACG
CATCGAATCGGCGATGCGCCTGCTGTATGGCGACGACAGCATTGCCAGCATCGGCCAGCGCTGCGGCTTTGCCGACCAGA
GCGCATTCGCGCGGCAATTCAAGGCCACGGTGGGCATGACCCCGCGCGACTACCGGGCGCTGAAAGGCCAGCTCTAA

Upstream 100 bases:

>100_bases
GAAATCCGCACAATCGCCGACCTGATTCACAGCCGCGCGTTTGCGCTAGGATCGGGGTCGGGCCGCGCCTTTCGCGCGAC
CGACAAATGCGACCGCCACG

Downstream 100 bases:

>100_bases
GACCGCGGCAGCACGCCGTGAGGGCGTATGCCGCAGATGCAGAATTCGGCAGGATTGCAGCCGGGCCGCGAGGCCCGTGG
CGCTGGCTGCGCTGAAGGAC

Product: transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MTPMDLNLPALEMQTLFDALPDVVFFIKDGEGRYTHCNLTLVRRLGRKLRSEIIGRSPLEVFPLPLGGSYMMQDRRVLCG
ELIDNQLEVHLYPNRLPGWCLTFKRPLCEGDEVIGVVGISRDLGQPDSRHSAYERLSQVMDHMQANFGDNLRVQALADLA
GLSVAQLERHFRRVFQVTPQQLLTKLRIESAMRLLYGDDSIASIGQRCGFADQSAFARQFKATVGMTPRDYRALKGQL

Sequences:

>Translated_238_residues
MTPMDLNLPALEMQTLFDALPDVVFFIKDGEGRYTHCNLTLVRRLGRKLRSEIIGRSPLEVFPLPLGGSYMMQDRRVLCG
ELIDNQLEVHLYPNRLPGWCLTFKRPLCEGDEVIGVVGISRDLGQPDSRHSAYERLSQVMDHMQANFGDNLRVQALADLA
GLSVAQLERHFRRVFQVTPQQLLTKLRIESAMRLLYGDDSIASIGQRCGFADQSAFARQFKATVGMTPRDYRALKGQL
>Mature_237_residues
TPMDLNLPALEMQTLFDALPDVVFFIKDGEGRYTHCNLTLVRRLGRKLRSEIIGRSPLEVFPLPLGGSYMMQDRRVLCGE
LIDNQLEVHLYPNRLPGWCLTFKRPLCEGDEVIGVVGISRDLGQPDSRHSAYERLSQVMDHMQANFGDNLRVQALADLAG
LSVAQLERHFRRVFQVTPQQLLTKLRIESAMRLLYGDDSIASIGQRCGFADQSAFARQFKATVGMTPRDYRALKGQL

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=103, Percent_Identity=32.0388349514563, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 26925; Mature: 26793

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPMDLNLPALEMQTLFDALPDVVFFIKDGEGRYTHCNLTLVRRLGRKLRSEIIGRSPLE
CCCCCCCCCHHHHHHHHHHHHHEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCE
VFPLPLGGSYMMQDRRVLCGELIDNQLEVHLYPNRLPGWCLTFKRPLCEGDEVIGVVGIS
EEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCEEEEEECC
RDLGQPDSRHSAYERLSQVMDHMQANFGDNLRVQALADLAGLSVAQLERHFRRVFQVTPQ
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHH
QLLTKLRIESAMRLLYGDDSIASIGQRCGFADQSAFARQFKATVGMTPRDYRALKGQL
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCC
>Mature Secondary Structure 
TPMDLNLPALEMQTLFDALPDVVFFIKDGEGRYTHCNLTLVRRLGRKLRSEIIGRSPLE
CCCCCCCCHHHHHHHHHHHHHEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCE
VFPLPLGGSYMMQDRRVLCGELIDNQLEVHLYPNRLPGWCLTFKRPLCEGDEVIGVVGIS
EEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCEEEEEECC
RDLGQPDSRHSAYERLSQVMDHMQANFGDNLRVQALADLAGLSVAQLERHFRRVFQVTPQ
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHH
QLLTKLRIESAMRLLYGDDSIASIGQRCGFADQSAFARQFKATVGMTPRDYRALKGQL
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA