Click here to switch to the map view.

The map label for this gene is yccZ [C]

Identifier: 66767982

GI number: 66767982

Start: 1993775

End: 1994416

Strand: Direct

Name: yccZ [C]

Synonym: XC_1658

Alternate gene names: 66767982

Gene position: 1993775-1994416 (Clockwise)

Preceding gene: 66767981

Following gene: 66767983

Centisome position: 38.72

GC content: 62.15

Gene sequence:

>642_bases
ATGTCGCTGGGCGCTTGCAGTACCGGCCCGGAGATGGCGTCTTCGCTGCCGCATCCGGACCCGCTGGCAATGTCCACGGT
GCAGCCCGAATACCGTCTTGCACCGGGCGATCTGTTGCTGGTGAAGGTGTTTCAGATCGACGATCTGGAGCGGCAGGTCC
GCATCGACCAGAACGGTCACATCTCATTGCCGTTGATTGGCGACGTCAAGGCCGCCGGTCTGGGCGTTGGCGAACTGGAA
AAGCTGGTCGCCGATCGGTATCGCGCTGGCTACCTTCAGCAGCCGCAGATTTCGGTGTTCGTGCAGGAGTCCAACGGGCG
TCGCGTCACGGTCACTGGTGCAGTGGACGAGCCGGGCATCTACCCGGTGATCGGCGCCAACCTCACCTTGCAGCAGGCGA
TCGCGCAGGCCAAGGGTGTCAGCACGGTGGCAAGTCGCGGCAACGTGATCGTGTTCCGCATGGTCAACGGGCAAAAAATG
ATTGCGCGGTTCGACCTGACCGAGATCGAGAAGGGGGCCAATCCGGATCCTGAGATCTATGGCGGCGACATTGTCGTGGT
GTATCGCTCGGATGCGCGCGTGTGGTTGCGCACCATGCTGGAACTGACCCCCTTGGTGATGGTGTGGCGCGCTTACCGAT
GA

Upstream 100 bases:

>100_bases
CGCGAGGTCCTGTCCCACCCAACAGAGGCAGCCAGCTACACGCATGAAGAAACTGATCGGACGACTCTGCCAAGGCCTCA
GCCTGGCTCTGCTCTGCTCG

Downstream 100 bases:

>100_bases
GTATGAATTCCGACAATCGTTCCTCTTCGTCGCAGCGTCATGGTCATCTGGAACTGGCAGATGTCGGCTTGATGGACTAC
TGGCGCGCCTTGGTCTCGCA

Product: GumB protein

Products: NA

Alternate protein names: Polysaccharide Biosynthesis/Export Protein; Polysaccharide Export Outer Membrane Protein; Polysaccharide Export Periplasmic Protein; Polysaccharide Export Protein EpsE; Periplasmic Polysaccharide Export Protein; Polysaccharide Export-Related Protein; GumB Protein; Amylovoran Export Outer Membrane Protein AmsH; Capsular Polysaccharide Export Protein; Polysaccharide Biosynthesis; Periplasmic Protein Involved In Polysaccharide Export; Capsule Polysaccharide Export Protein; Polysaccharide Biosynthesis/Export Lipoprotein; Outer Membrane Protein Performing Polysaccharide Export; Polysaccharide Secretin Protein HfsD; Polysaccharide Export System Protein; Polysaccharide Export Protein Epse; Xanthan Biosynthesis Polysaccharide Export Protein GumB; Outer Membrane Xanthan Exporter; Polysaccharide Biosynthesis Protein

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MSLGACSTGPEMASSLPHPDPLAMSTVQPEYRLAPGDLLLVKVFQIDDLERQVRIDQNGHISLPLIGDVKAAGLGVGELE
KLVADRYRAGYLQQPQISVFVQESNGRRVTVTGAVDEPGIYPVIGANLTLQQAIAQAKGVSTVASRGNVIVFRMVNGQKM
IARFDLTEIEKGANPDPEIYGGDIVVVYRSDARVWLRTMLELTPLVMVWRAYR

Sequences:

>Translated_213_residues
MSLGACSTGPEMASSLPHPDPLAMSTVQPEYRLAPGDLLLVKVFQIDDLERQVRIDQNGHISLPLIGDVKAAGLGVGELE
KLVADRYRAGYLQQPQISVFVQESNGRRVTVTGAVDEPGIYPVIGANLTLQQAIAQAKGVSTVASRGNVIVFRMVNGQKM
IARFDLTEIEKGANPDPEIYGGDIVVVYRSDARVWLRTMLELTPLVMVWRAYR
>Mature_212_residues
SLGACSTGPEMASSLPHPDPLAMSTVQPEYRLAPGDLLLVKVFQIDDLERQVRIDQNGHISLPLIGDVKAAGLGVGELEK
LVADRYRAGYLQQPQISVFVQESNGRRVTVTGAVDEPGIYPVIGANLTLQQAIAQAKGVSTVASRGNVIVFRMVNGQKMI
ARFDLTEIEKGANPDPEIYGGDIVVVYRSDARVWLRTMLELTPLVMVWRAYR

Specific function: May Be Involved In Polysaccharide Transport. [C]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Integral Membrane Protein. Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23273; Mature: 23142

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLGACSTGPEMASSLPHPDPLAMSTVQPEYRLAPGDLLLVKVFQIDDLERQVRIDQNGH
CCCCCCCCCHHHHHCCCCCCCCEEEECCCCEEECCCCEEEEEEEECCCCCCEEEECCCCC
ISLPLIGDVKAAGLGVGELEKLVADRYRAGYLQQPQISVFVQESNGRRVTVTGAVDEPGI
EEEEEECCCHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCC
YPVIGANLTLQQAIAQAKGVSTVASRGNVIVFRMVNGQKMIARFDLTEIEKGANPDPEIY
EEEECCCCHHHHHHHHHCCCHHHHCCCCEEEEEEECCCEEEEEECHHHHHCCCCCCCCEE
GGDIVVVYRSDARVWLRTMLELTPLVMVWRAYR
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLGACSTGPEMASSLPHPDPLAMSTVQPEYRLAPGDLLLVKVFQIDDLERQVRIDQNGH
CCCCCCCCHHHHHCCCCCCCCEEEECCCCEEECCCCEEEEEEEECCCCCCEEEECCCCC
ISLPLIGDVKAAGLGVGELEKLVADRYRAGYLQQPQISVFVQESNGRRVTVTGAVDEPGI
EEEEEECCCHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCC
YPVIGANLTLQQAIAQAKGVSTVASRGNVIVFRMVNGQKMIARFDLTEIEKGANPDPEIY
EEEECCCCHHHHHHHHHCCCHHHHCCCCEEEEEEECCCEEEEEECHHHHHCCCCCCCCEE
GGDIVVVYRSDARVWLRTMLELTPLVMVWRAYR
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA